New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5138301 =	35 (1.240)	4 (0.150)	4/236	NT	10.7%	coding (440/963 nt)	PP_4523	agmatinase
	?	NC_002947	5138332 =	33 (1.220)					coding (471/963 nt)	PP_4523	agmatinase

CAACACCTTCAACCTGCTGGACGCCGTGCGCATCATCGAAGAAGCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCG  >  NC_002947/5138152‑5138441                                                                                                                                                      |                                                                                                                                             gacggctccagttgaagtcgtcggcggtgtagccctgggcgcgcaggccgatctgcaccacgcggtcgcagtcgagcaggccttcttccacggcgcggcggaaggtggtgccgtgggcgatcttctcgccgaacatgtggtcgttgacgt                                                                                                                                              <  2:256438‑M1/1‑1 (MQ=255)  aaCACCTTCAACCTGCTGGACGCCGTGCGCATCATCGAAGAAGCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATc                                                                                                                                             <  2:247289/150‑1 (MQ=255)   acacCTTCAACCTGCTGGACGCCGTGCGCATCATCGAAGAAGCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCg                                                                                                                                            >  1:93137/1‑150 (MQ=255)    cacCTTCAACCTGCTGGACGCCGTGCGCATCATCGAAGAAGCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCgg                                                                                                                                           >  1:458453/1‑150 (MQ=255)     gctccagttgaagtcgtcggcggtgtagccctgggcgcgcaggccgatctgcaccacgcggtcgcagtcgagcaggccttcttccacggcgcggcggaaggtggtgccgtgggcgatcttctcgccgaacatgtggtcgttgacgTCGGc                                                                                                                                          <  2:452971‑M1/5‑1 (MQ=255)        ttCAACCTGCTGGACGCCGTGCGCATCATCGAAGAAGCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAGCACGGCAAGATCGGCCTg                                                                                                                                       >  1:728120/1‑150 (MQ=255)                    gACGCCGTGCGCATCATCGAAGAAGCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGAt                                                                                                                           <  2:728120/150‑1 (MQ=255)                      cGCCGTGCGCATCATCGAAGAAGCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGc                                                                                                                         <  2:510832/150‑1 (MQ=255)                                     cGAAGAAGCGTATGACGAGATCGTCAAACACAACGTCATTCCCATGACCCTAGGGGTCGATCACCCCATCACCCTGCCGATACTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTAGTACAAATCGATGCCCACGCCGACGTCaa                                                                                                          >  1:82969/1‑150 (MQ=255)                                        agaagCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGa                                                                                                       <  2:466915/150‑1 (MQ=255)                                         gaagCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGAc                                                                                                      <  2:93137/150‑1 (MQ=255)                                                    cGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCgg                                                                                           <  2:608772/150‑1 (MQ=255)                                                     gagaTCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGc                                                                                          <  2:139306/150‑1 (MQ=255)                                                            tcgAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGagaaga                                                                                   >  1:134119/1‑150 (MQ=255)                                                              gcggtcgcagtcgagcaggccttcttccacggcgcggcggaaggtggtgccgtgggcgatcttctcgccgaacatgtggtcgttgacgTCGGCCTGGTACACATCGATGCCCACGCCGACGTCAAc                                                                                                         <  1:388799‑M1/38‑1 (MQ=255)                                                              gcggtcgcagtcgagcaggccttcttccacggcgcggcggaaggtggtgccgtgggcgatcttctcgccgaacatgtggtcgttgacgTCGGCCTGGTACACATCGATGCCCACGCCGACGTCAAc                                                                                                         >  2:388799‑M1/89‑126 (MQ=255)                                                                      cGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACgg                                                                         >  1:256438/1‑150 (MQ=255)                                                                      agtcgagcaggccttcttccacggcgcggcggaaggtggtgccgtgggcgatcttctcgccgaacatgtggtcgttgacgTCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACcac                                                                                                   >  1:559169‑M1/81‑124 (MQ=255)                                                                      agtcgagcaggacttcttccacggcgcggcggaaggtggtgccgtgggcgatcttctcgccgaacatgtggtcgttgacgTCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACcac                                                                                                   <  2:559169‑M1/44‑1 (MQ=255)                                                                         cATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGcac                                                                      <  2:117508/150‑1 (MQ=255)                                                                              ccATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCt                                                                 >  1:547837/1‑150 (MQ=255)                                                                              ccATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCt                                                                 >  2:337401/1‑150 (MQ=255)                                                                                aTGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTc                                                               >  1:311873/1‑150 (MQ=255)                                                                                    cccTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTccgcc                                                           >  1:365912/1‑150 (MQ=255)                                                                                                aTCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGgaag                                               >  1:499910/1‑150 (MQ=255)                                                                                                aTCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCGGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGgaag                                               >  1:92294/1‑150 (MQ=255)                                                                                                 tCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGgaaga                                              >  2:392634/1‑150 (MQ=255)                                                                                                     acCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGc                                          <  2:458453/150‑1 (MQ=255)                                                                                                       cATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCt                                        >  1:508226/1‑150 (MQ=255)                                                                                                           aCCCTGCCGATCCTGCGTGCTCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTc                                                                                             <  2:552768/93‑1 (MQ=255)                                                                                                           aCCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCt                                                                                                                                        >  2:393269/1‑50 (MQ=255)                                                                                                           aCCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCt                                                                                                                                        <  1:393269/50‑1 (MQ=255)                                                                                                           aCCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTc                                                                                             >  1:552768/1‑93 (MQ=255)                                                                                                             ccTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGa                                  <  2:40508/150‑1 (MQ=255)                                                                                                             ccTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGa                                  <  2:40519/150‑1 (MQ=255)                                                                                                                   gATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGa                            >  2:276812/1‑150 (MQ=255)                                                                                                                         gcgtgcgCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGTGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCgt                      <  2:118977/150‑1 (MQ=255)                                                                                                                         gcgtgcgCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCgt                      <  2:547837/150‑1 (MQ=255)                                                                                                                            tgcgCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCtt                                                                <  1:637513/105‑1 (MQ=255)                                                                                                                            tgcgCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCtt                                                                >  2:637513/1‑105 (MQ=255)                                                                                                                            tgcgCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGGTGCGCCTTTTAAGAAGGCCTGCTCCACTGCGACCGCgtggt                   <  1:707575/150‑1 (MQ=255)                                                                                                                                             acGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTgcgcg  >  1:634016/1‑150 (MQ=255)                                                                                                                                               ggCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCgtg                     <  1:76644/129‑1 (MQ=255)                                                                                                                                               ggCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCgtg                     >  2:76644/1‑129 (MQ=255)                                                                                                                                                      |                                                                                                                                             CAACACCTTCAACCTGCTGGACGCCGTGCGCATCATCGAAGAAGCGTATGACGAGATCGTCGAGCACAACGTCATTCCCATGACCCTGGGGGGCGATCACACCATCACCCTGCCGATCCTGCGTGCGCTGCACAAGAAACACGGCAAGATCGGCCTGGTACACATCGATGCCCACGCCGACGTCAACGACCACATGTTCGGCGAGAAGATCGCCCACGGCACCACCTTCCGCCGCGCCGTGGAAGAAGGCCTGCTCGACTGCGACCGCGTGGTGCAGATCGGCCTGCGCG  >  NC_002947/5138152‑5138441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.