New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1657857 =	31 (1.100)	4 (0.150)	4/230	NT	13.6%	coding (679/1698 nt)	PP_1450	TPS family activation/secretion protein
	?	NC_002947	1657905 =	22 (0.840)					coding (631/1698 nt)	PP_1450	TPS family activation/secretion protein

GCTGTCCAGGCCAATGCCGAGGTTGACGCGGTGGCGGCCGGTCAGCTCGCTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGAAGGCACTGGAGAGA  >  NC_002947/1657759‑1658017                                                                                                                                                   |                                                                                                                 gCTGTCCAGGCCAATGCCGAGGTTGACGCGGTGGGGGCCGGTCAGCTCTCTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGACGGGCAGCaa                                                                                                               <  2:154659/150‑1 (MQ=255)     tCCAGGCCAATGCCGAGGTTGACGCGGTGGCGGCCGGTCAGCTCGCTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTg                                                                                                           >  1:326013/1‑150 (MQ=255)                  cGAGGTTGACGCGGTGGCGGCCGGTCAGCTCGCTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCAt                                                                                              >  2:70715/1‑150 (MQ=255)                                  gcggcCGGTCAGCTCGCTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGtt                                                                              <  1:9489/150‑1 (MQ=255)                                    ggcCGGTCAGCTCGCTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGa                                                                            >  1:528595/1‑150 (MQ=255)                                        ggTCAGCTCGCTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTg                                                                        >  2:73357/1‑150 (MQ=255)                                                  cTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCt                                                              >  2:399437/1‑150 (MQ=255)                                                              tCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCg                                                  <  2:528595/150‑1 (MQ=255)                                                              tCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCg                                                  >  1:573821/1‑150 (MQ=255)                                                                   gCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAg                                             <  1:73357/150‑1 (MQ=255)                                                                   gCGGCTGTCCAGGTGCAAGCGTGAAACAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGAGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAg                                             >  2:189534/1‑150 (MQ=255)                                                                    cGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAgg                                            <  1:399437/150‑1 (MQ=255)                                                                      gCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGc                                                                >  1:355990/1‑128 (MQ=255)                                                                      gCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGc                                                                <  2:355990/128‑1 (MQ=255)                                                                      gCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTa                                          >  2:741897/1‑150 (MQ=255)                                                                          tCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGAGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGt                                      <  2:76232/150‑1 (MQ=255)                                                                               gTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTg                                 >  1:460627/1‑150 (MQ=255)                                                                                tGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGc                                <  2:573821/150‑1 (MQ=255)                                                                                            gCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAg                                       <  2:431773/131‑1 (MQ=255)                                                                                            gCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAg                                       >  1:431773/1‑131 (MQ=255)                                                                                                 tttGCCCGGCTGCACGACCACGCGGGTGGCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGaa               <  2:742421/149‑1 (MQ=255)                                                                                                   tgcccggcgaactgcagggcggcacccgcgtggtcgtgcagccgggcaGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTg                                                                        <  2:17703‑M2/43‑1 (MQ=255)                                                                                                   tgcccggcgaactgcagggcggcacccgcgtggtcgtgcagccgggcaGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTg                                                                        >  1:17703‑M2/49‑91 (MQ=255)                                                                                                     CCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGAAGGCa           >  2:326013‑M1/1‑150 (MQ=255)                                                                                                      ccggcgaactgcagggcggcacccgcgtggtcgtgcagccgggcaGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCaa                            >  2:248974‑M2/46‑132 (MQ=255)                                                                                                      ccggcgaactgcagggcggcacccgcgtggtcgtgcagccgggcaGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCaa                            <  1:248974‑M2/87‑1 (MQ=255)                                                                                                      CCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGAAGGCAc          <  1:266368‑M1/150‑1 (MQ=255)                                                                                                        GGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGAAGGCACTg        >  2:266368‑M1/1‑150 (MQ=255)                                                                                                         GCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGAAGGCACTgg       >  2:701580‑M1/1‑150 (MQ=255)                                                                                                            gCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGAAGGCACTGgaga    <  2:735065/150‑1 (MQ=255)                                                                                                              aCGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGAAGGCACTGgagaga  <  1:77817/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                 GCTGTCCAGGCCAATGCCGAGGTTGACGCGGTGGCGGCCGGTCAGCTCGCTGCCCCGGTTGTCGAAGCGGCTGTCCAGGTGCCAGCGTGAAGCAACCTTGCCCGGCTGCACGACCACGCGGGTGCCGCCCTGCAGTTCGCCGGGCAGCAAGGTGGCGCCCAGTTCATAGGCGCGAAGGCGGTTGAGCTGGTCCAGGCCTTGCTCAAGGTCGGGCAGGTACAGTGGCTGCCCAAGCAGGCCTGGGAAGGCACTGGAGAGA  >  NC_002947/1657759‑1658017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.