New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2308940 =	26 (0.920)	4 (0.150)	4/238	NT	13.5%	coding (173/957 nt)	PP_2031	hypothetical protein
	?	NC_002947	2308966 =	26 (0.950)					coding (147/957 nt)	PP_2031	hypothetical protein

AAGATCGGCCGCTCGCGTTCTTCGTGGAACAGCTTGGTGTGCGGCTCCTGGGTACGCGCAGTGACACGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCAGTGGGCATGGGTTCAGGCAA  >  NC_002947/2308817‑2309112                                                                                                                                                       |                                                                                                                                                   aaGATCGGCCGCTCGCGTTCTTCGTGGAACAGCTTGGTGTGCGGCTCCTGGGTACGCGCAGTGACACGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGaa                                                                                                                                                    <  1:516238/150‑1 (MQ=255)   gATCGGCCGCTCGCGTTCTTCGTGGAACAGCTTGGTGTGCGGCTCCTGGGTACGCGCAGTGACACGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATg                                                                                                                                                  >  1:30353/1‑150 (MQ=255)        gccgaacacggcatccgcattggccttgccgagctgatcgacatgcgccaccgcgtgcgcgaaatccagctgttttccaagcccggccagcgcagcccactggtgggcctgcaccattccacgccgcgcccgcgcagcttggaATGGTGc                                                                                                                                              >  2:688731‑M2/144‑150 (MQ=255)          cGCTCGCGTTCTTCGTGGAACAGCTTGGTGTGCGGCTCCTGGGTACGCGCAGTGACACGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAgg                                                                                                                                           <  2:288205/150‑1 (MQ=255)              cacggcatccgcattggccttgccgagctgatcgacatgcgccaccgcgtgcgcgaaatccagctgttttccaagcccggccagcgcagcccactggtgggcctgcaccattccacgccgcgcccgcgcagcttggaATGGTGCAGGccc                                                                                                                                        <  1:688731‑M2/13‑1 (MQ=255)                 gTTCTTCGTGGACAAGCTTGGTGTGCGGCTCCTGGGTACGCGCAGTGACACGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCccacca                                                                                                                                    >  2:184454/1‑150 (MQ=255)                 gTTCTTCGTGGAACAGCTTGGTGTGCGGCTCCTGGGTACGCGCAGTGACACGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCccacca                                                                                                                                    >  2:376186/1‑150 (MQ=255)                         tGGAACAGCTTGGTGTGCGGCTCCTGGGTACGGGCATTGACACGCCATTCGATGTTGCGCCCATCATCGCCGGCCCGCCAGTCACAC‑GCTGCACCTAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGACGGCCCAGTAGTGGGCTg                                                                                                                            >  1:734162/1‑150 (MQ=255)                                                          gcAGTGACACGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTcg                                                                                           >  1:286301/1‑150 (MQ=255)                                                               tgcgcgaaatccagctgttttccaagcccggccagcgcagcccactggtgggcctgcaccattccacgccgcgcccgcgcagcttggaATGGTGCAGGCCCACCAGTGGGCTGCGCt                                                                                                                        <  1:217633‑M2/29‑1 (MQ=255)                                                               tgcgcgaaatccagctgttttccaagcccggccagcgcagcccactggtgggcctgcaccattccacgccgcgcccgcgcagcttggaATGGTGCAGGCCCACCAGTGGGCTGCGCt                                                                                                                        >  2:217633‑M2/89‑117 (MQ=255)                                                                 cacGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCAcgc                                                                                    <  2:286301/150‑1 (MQ=255)                                                                  acGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCAcgcg                                                                                   >  1:554678/1‑150 (MQ=255)                                                                    gCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGt                                                                                 >  1:252544/1‑150 (MQ=255)                                                                          cGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCa                                                                           <  2:30353/150‑1 (MQ=255)                                                                              gTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTc                                                                       <  1:184454/150‑1 (MQ=255)                                                                                 gcgcACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGAt                                                                    <  2:734162/150‑1 (MQ=255)                                                                                   gcACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCa                                                                  >  2:634334/1‑150 (MQ=255)                                                                                       atcatcGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCtt                                                                                                              <  1:51825/102‑1 (MQ=255)                                                                                       atcatcGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCtt                                                                                                              >  2:51825/1‑102 (MQ=255)                                                                                        tcatcGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCg                                                             >  1:40969/1‑150 (MQ=255)                                                                                           tcGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCa                                                          >  1:58486/1‑150 (MQ=255)                                                                                                agcgcagcccactggtgggcctgcaccatTCCAAGCTGCGCGGGCGCGGCGTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCa                                                                                       >  2:217633‑M1/30‑117 (MQ=255)                                                                                                agcgcagcccactggtgggcctgcaccatTCCAAGCTGCGCGGGCGCGGCGTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCa                                                                                       <  1:217633‑M1/88‑1 (MQ=255)                                                                                                 gCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCaa                                                         <  1:321628/145‑1 (MQ=255)                                                                                                 gCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCaa                                                         >  2:321628/1‑145 (MQ=255)                                                                                                      gTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCGGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCg                                               >  2:705434/1‑150 (MQ=255)                                                                                                                gggcctgcaccatTCCAAGCTGCGCGGGCGCGGCGTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCgtg                                      <  1:688731‑M1/137‑1 (MQ=255)                                                                                                                      gcaccatTCCAAGCTGCGCGGGCGCGGCGTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGc                                >  2:688731‑M1/8‑150 (MQ=255)                                                                                                                      gTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCTGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGc                                >  1:266765/1‑150 (MQ=255)                                                                                                                      gTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGc                                >  1:573277/1‑150 (MQ=255)                                                                                                                           aGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCt                           <  1:576546/150‑1 (MQ=255)                                                                                                                             TCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCAGGCGGCGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTgc                         <  1:357790‑M1/150‑1 (MQ=255)                                                                                                                                ACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCa                      >  1:376186‑M1/1‑150 (MQ=255)                                                                                                                                   ccgcgcccgcgcAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTTGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCAGTg                   <  1:288784/150‑1 (MQ=255)                                                                                                                                          cgcgcAGCTTGGAATGGTGCAGGGCTGCCAGTGGGCTGCGCTGGCCGGGCTTTGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCAGTGGGCATgg            <  2:266765/150‑1 (MQ=255)                                                                                                                                           gcgcAGCTGGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCACGGCCACTGCTGATGCCGTGTTCGGCCAGCTGCGCAGTGGGCATggg           >  2:552040/1‑150 (MQ=255)                                                                                                                                             gcAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTTTTCGGCCAGCTGCGCAGTGGGCATGGGtt         <  2:554678/150‑1 (MQ=255)                                                                                                                                                gCTTGGAATGGTGCAGGCCCCCCAGTGGGCTGCGCTGGCCGGGCTTGGAGAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCAGTGGGCATGGGTTCAg      <  2:6135/150‑1 (MQ=255)                                                                                                                                                gCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCAGTGGGCATGGGTTCAg      <  1:318535/150‑1 (MQ=255)                                                                                                                                                gCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCAGTGGGCATGGGTTCAg      >  1:71815/1‑150 (MQ=255)                                                                                                                                                    ggaATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCAGTGGGCATGGGTTCAGGCaa  <  2:71815‑M2/147‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                   AAGATCGGCCGCTCGCGTTCTTCGTGGAACAGCTTGGTGTGCGGCTCCTGGGTACGCGCAGTGACACGCCAGTCGATGTTGCGCACATCATCGCCGGCCTGGTAAACGCGCACCTG‑GTCGAAGTCCACGCCGCGCCCGCGCAGCTTGGAATGGTGCAGGCCCACCAGTGGGCTGCGCTGGCCGGGCTTGGAAAACAGCTGGATTTCGCGCACGCGGTGGCGCATGTCGATCAGCTCGGCAAGGCCAATGCGGATGCCGTGTTCGGCCAGCTGCGCAGTGGGCATGGGTTCAGGCAA  >  NC_002947/2308817‑2309112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.