New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3915818	32 (1.140)	3 (0.110)	3/230	NT	10.0%	coding (743/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
	?	NC_002947	= 3915870	24 (0.910)					coding (795/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein

ACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGCCATC  >  NC_002947/3915724‑3916017                                                                                                                                                   |                                                                                                                                                    aCCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTTCGCGCAGGCGAATTGCAGCAGGTGGGGGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatc                                                                                                                                                  <  2:88521‑M2/150‑4 (MQ=255)     aGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatcagcg                                                                                                                                              <  1:742730‑M2/150‑8 (MQ=255)      gTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCAATGCGCAACAACGAATATCAGCGGGTGGGCGACGGTCATGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGGTGCCGTGCAAGCTGCTGTTCTCCGACatcagcgt                                                                                                                                             <  1:694468‑M2/150‑9 (MQ=255)       tCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTc                                                                                                                                            <  1:96490/150‑1 (MQ=255)       tCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTc                                                                                                                                            <  1:704857/150‑1 (MQ=255)         tACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCGAGGAAGAGCGTCGTGTCGGGCCGCTGCCTGGCAAGCTGCTGTTCTCCGACATCAGCGTCgg                                                                                                                                          >  2:209601/1‑149 (MQ=255)                   cTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGAc                                                                                                                                                     <  1:156337/129‑1 (MQ=255)                   cTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGAc                                                                                                                                                     >  2:156337/1‑129 (MQ=255)                      aaCGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCaccaac                                                                                                                             <  1:91024/150‑1 (MQ=255)                      aaCGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCaccaac                                                                                                                             >  1:322564/1‑150 (MQ=255)                         gCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAg                                                                                                                          >  1:104695/1‑150 (MQ=255)                                gccgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCa                                                                                                                                     <  1:459618/132‑1 (MQ=255)                                gccgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCa                                                                                                                                     >  2:459618/1‑132 (MQ=255)                                 ccgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCt                                                                                                                  >  1:155963/1‑150 (MQ=255)                                  cgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTg                                                                                                                 >  2:525192/1‑150 (MQ=255)                                                 ggCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTcccc                                                                                                  <  2:742730/150‑1 (MQ=255)                                                            gcagGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGAc                                                                                         <  2:296520/148‑1 (MQ=255)                                                            gcagGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGAc                                                                                         >  1:296520/1‑148 (MQ=255)                                                               ggTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGGCCTCGa                                                                                    <  2:104695/150‑1 (MQ=255)                                                                     cGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACctgct                                                                              <  1:525192/150‑1 (MQ=255)                                                                          gCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGCTCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAg                                                                         <  2:694468/150‑1 (MQ=255)                                                                           ccAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGAc                                                                                                                                         <  2:512223/85‑1 (MQ=255)                                                                           ccAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGAc                                                                                                                                         >  1:512223/1‑85 (MQ=255)                                                                           ccAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCGACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAgg                                                                        <  1:166486/150‑1 (MQ=255)                                                                                cACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCt                                                                   >  1:475865/1‑150 (MQ=255)                                                                                      ccACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGc                                                             <  2:322564/150‑1 (MQ=255)                                                                                       cACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatcagcgtggcgcgtgcctggccgtcgcccacctgctgcaattcgccggcgcgcagggcgcggcgcagggcgttgagctcgcgggtaga                                                            <  1:425519‑M2/150‑90 (MQ=255)                                                                                        aCGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatcagcgtggcgcgtgcctggccgtcgcccacctgctgcaattcgccggcgcgcagggcgcggcgcagggcgttgagctcgcgggtagac                                                           <  1:110637‑M2/150‑91 (MQ=255)                                                                                                   ggATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGa                                                >  1:449795/1‑150 (MQ=255)                                                                                                       gACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACatcagcgtggcgcgtgcctggccgtcgcccacctgctgcaattcgccggcgcgcagggcgcggcgcagggcgttgagctcgcgggtagactgggtgacatcggca                                            >  2:110637‑M2/1‑45 (MQ=255)                                                                                                         cGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTAc                                                       >  2:442054/1‑137 (MQ=255)                                                                                                         cGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTAc                                                       <  1:442054/137‑1 (MQ=255)                                                                                                            cAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGt                                       <  2:403538/150‑1 (MQ=255)                                                                                                                       cGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAgg                            >  2:141931/1‑150 (MQ=255)                                                                                                                            ccGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTg                       >  1:499676/1‑150 (MQ=255)                                                                                                                                      tgctgTTCTCCGACATCAGCGTCGACCCCAGAACCCACCCGATCACTCTCCGCAGAGAGAGCTCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGc             >  2:649449/1‑150 (MQ=255)                                                                                                                                              tcCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGcc     >  1:582804/1‑150 (MQ=255)                                                                                                                                               ccGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGCCa    <  2:330948/150‑1 (MQ=255)                                                                                                                                                 gACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGCCATc  >  1:625256/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGTGCAACCCAAGGGCCTGAGCGTGCCGCAACGCGCCATC  >  NC_002947/3915724‑3916017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.