| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 358087 | 7 (0.240) | 5 (0.230) | 7/198 | 1.8 | 43.0% | intergenic (+52/‑78) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| ? | NC_002947 | = 358099 | 8 (0.370) | intergenic (+64/‑66) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein | |||||
CACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/357919‑358087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcctcttcgcgggcaagcccgctcctacaggGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCCGCGCGAGGTCTCTTTGTACTTGTCGTGCATATCGGCGCCGGTATCGCGCATG < NC_002947/358099‑357951 CACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGG < 2:657563/150‑1CACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGG > 2:387277/1‑150 TTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCC < 1:550290/150‑1 TTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCC < 1:550396/150‑1 TACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAA < 1:379210/113‑1 TACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAA > 2:379210/1‑113 CACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGC > 2:259046/1‑135 AGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGA < 2:665408/81‑1 AGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGA > 1:665408/1‑81 CTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGC < 2:275354/71‑1 CTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGC > 1:275354/1‑71 GGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAA > 1:647287/1‑96 GGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAA < 2:647287/96‑1 GCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCCGCGCGAGGTCTCTTTGTACTTGTCGTGCATATCGGCGC > 2:568974/1‑150 CCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCC > 1:409269/1‑111 CCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCC < 2:409269/111‑1 GCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCCGCGCGAGGTCTCTTTGTACTTGTCGTGCATATCGGCGCCG < 1:575536/148‑1 GCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCCGCGCGAGGTCTCTTTGTACTTGTCGTGCATATCGGCGCCG > 2:575536/1‑148 GCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCCGCGCGAGGTCTCTTTGTACTTGTCGTG > 1:259046/1‑135 TACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCCGCGCGAGGTCCCTTTGTACTTGTCGTGCATATCGGCGCCGGTATCGC > 1:638125/1‑150 GGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCCGCGCGAGGTCCCTTTGTACTTGTCGTGCATATCGGCGCCGGTATCGCGCATG < 2:638125/150‑1 CACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/357919‑358087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcctcttcgcgggcaagcccgctcctacaggGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCAGAAGGTCAGCTCAGAAAATCAGCACTCGATAGCGCTGACCGCCAGGCCGCCGCGCGAGGTCTCTTTGTACTTGTCGTGCATATCGGCGCCGGTATCGCGCATG < NC_002947/358099‑357951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |