New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 358087	7 (0.240)	5 (0.230)	7/198	1.8	43.0%	intergenic (+52/‑78)	tdcG‑I/PP_5441	L‑serine dehydratase/hypothetical protein
	?	NC_002947	= 358099	8 (0.370)					intergenic (+64/‑66)	tdcG‑I/PP_5441	L‑serine dehydratase/hypothetical protein

AATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTG  >  NC_002947/357942‑358236                                                                                                                                                  |                                                                                                                                                      aaTCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACt                                                                                                                                                   <  1:387277/150‑1 (MQ=255)          cATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGGGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCc                                                                                                                                          <  2:638125‑M2/150‑2 (MQ=255)               gcgATACCGGCGCCGATATGCACGACAAGTACAAAGGGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgta                                                                                                                                     >  1:638125‑M2/1‑144 (MQ=255)                      cGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagc                                                                                                                                >  2:575536‑M2/1‑137 (MQ=255)                      cGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagc                                                                                                                                <  1:575536‑M2/148‑12 (MQ=255)                        gcgcCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagcgggc                                                                                                                            >  2:568974‑M2/1‑135 (MQ=255)                                   cACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagc                                                                                                                                >  2:259046‑M1/1‑112 (MQ=255)                                   cACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTcctgtaggagc                                                                                                                                >  1:259046‑M2/1‑124 (MQ=255)                                                              ggcggcCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTcctgtaggagcggg                                                                                                                             >  1:409269‑M2/1‑97 (MQ=255)                                                              ggcggcCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTcctgtaggagcggg                                                                                                                             <  2:409269‑M2/111‑15 (MQ=255)                                                                                       aGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtagga                                                                                                                                  <  2:665408‑M1/81‑22 (MQ=255)                                                                                       aGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtagga                                                                                                                                  >  1:665408‑M1/1‑60 (MQ=255)                                                                                               ttttCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcc                                                                                                           >  1:647287‑M2/1‑64 (MQ=255)                                                                                               ttttCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcc                                                                                                           <  2:647287‑M2/96‑33 (MQ=255)                                                                                                   cTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagc                                                                                                                                >  1:275354‑M1/1‑48 (MQ=255)                                                                                                   cTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagc                                                                                                                                <  2:275354‑M1/71‑24 (MQ=255)                                                                                                                   ggCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaa                                                                                       >  1:647287‑M1/1‑32 (MQ=255)                                                                                                                   ggCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaa                                                                                       <  2:647287‑M1/96‑65 (MQ=255)                                                                                                                          gagcgGGCTTGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGTGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCCATCGTggg                          >  2:581169/3‑150 (MQ=39)                                                                                                                               ggCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAg                                                                                           <  1:671687/80‑1 (MQ=255)                                                                                                                               ggCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAg                                                                                           >  2:671687/1‑80 (MQ=255)                                                                                                                                    gCCCGCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgc                >  2:568974‑M1/1‑15 (MQ=255)                                                                                                                                     cccGCTCCTACAGGaactgtgcaatccctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgcc                                                      <  2:409269‑M1/111‑98 (MQ=255)                                                                                                                                     cccGCTCCTACAGGaactgtgcaatccctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgcc                                                      >  1:409269‑M1/1‑14 (MQ=255)                                                                                                                                        gCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgccg              <  1:575536‑M1/148‑138 (MQ=255)                                                                                                                                        gCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgccg              >  2:575536‑M1/1‑11 (MQ=255)                                                                                                                                        gCTCCTACAGGaactgtgcaatccctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtg                           >  1:259046‑M1/1‑11 (MQ=255)                                                                                                                                        gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtg                           >  2:259046‑M2/1‑23 (MQ=255)                                                                                                                                        gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcag                                                                                           >  1:275354‑M2/1‑23 (MQ=255)                                                                                                                                        gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcag                                                                                           <  2:275354‑M2/71‑49 (MQ=255)                                                                                                                                        gCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGGAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAgt            >  1:331037/1‑150 (MQ=255)                                                                                                                                          tCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcact                                                                               >  1:665408‑M2/1‑21 (MQ=255)                                                                                                                                          tCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcact                                                                               <  2:665408‑M2/81‑61 (MQ=255)                                                                                                                                             tACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtccctttgtacttgtcgtgcatatcggcgccggtatcgc       >  1:638125‑M1/1‑6 (MQ=255)                                                                                                                                             tACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGc                                                                      >  2:376093/1‑87 (MQ=255)                                                                                                                                             tACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGc                                                                      <  1:376093/87‑1 (MQ=255)                                                                                                                                                  ggattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtccctttgtacttgtcgtgcatatcggcgccggtatcgcgcatg  <  2:638125‑M1/150‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                      AATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTG  >  NC_002947/357942‑358236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.