New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2655400	26 (0.900)	7 (0.250)	7/254	2.4	21.2%	intergenic (+71/+99)	cysB/cysH	transcriptional regulator CysB/phosphoadenosine phosphosulfate reductase
	?	NC_002947	= 2655479	27 (0.970)					intergenic (+150/+20)	cysB/cysH	transcriptional regulator CysB/phosphoadenosine phosphosulfate reductase

GATGGCCAAGGCCATTCAGTGCCATAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2655251‑2655400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtAGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGC  <  NC_002947/2655479‑2655390                                                                                                                                                                                                                                                  GATGGCCAAGGCCATTCAGTGCCATAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGT                                                                                            <  1:713666/150‑1                                                                                           TGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGC  <  2:79500/150‑1                                                                                                 CGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGG       >  1:231393/1‑139                                                                                                 CGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGG       <  2:231393/139‑1                                                                                                         GAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAG         <  1:297245/129‑1                                                                                                         GAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAG         >  2:297245/1‑129                                                                                                                                              GATCCCTGTGGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG                          <  1:60442/75‑1                                                                                                                                              GATCCCTGTGGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG                          >  2:60442/1‑75                                                                                                                                                                                                                                                  GATGGCCAAGGCCATTCAGTGCCATAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2655251‑2655400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtAGGAGCGGGTTTACCCGCGAAGAAGACACCGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGGATCGC  <  NC_002947/2655479‑2655390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.