| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2655400 | 26 (0.900) | 7 (0.250) | 7/254 | 2.4 | 21.2% | intergenic (+71/+99) | cysB/cysH | transcriptional regulator CysB/phosphoadenosine phosphosulfate reductase |
| ? | NC_002947 | = 2655479 | 27 (0.970) | intergenic (+150/+20) | cysB/cysH | transcriptional regulator CysB/phosphoadenosine phosphosulfate reductase | |||||
GATGGCCAAGGCCATTCAGTGCCATAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAGCTATCTCAAGCCTTGCTGATCAGGTTGCCCGCATGCAACCCGCATT > NC_002947/2655251‑2655539 | gATGGCCAAGGCCATTCAGTGCCATAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGT < 1:713666‑M1/150‑1 (MQ=255) aTNGCCAAGGCCATTCAGTGCCATAACNAGCAAGAGCTGGNAGAATTNTNCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCtgtg > 1:526424/1‑150 (MQ=255) gCCATTCAGTGCCATAACAAGCAAGAGCTGGAAGTGTATTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGCGAGGGGACCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGc > 1:242646/1‑150 (MQ=38) cATTCAGTGCCATAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCTGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTATCATGGCTGGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCtt > 1:408403/1‑150 (MQ=38) tGCCATAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCcgcg > 1:137596/1‑150 (MQ=255) aTAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAaca > 2:215647/1‑150 (MQ=255) aaCAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACg > 1:114767/1‑150 (MQ=255) cTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGt < 2:563274/150‑1 (MQ=255) cTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGGAGAATGAGTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGt < 2:242646/150‑1 (MQ=25) aagaaTTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCa < 1:215647/150‑1 (MQ=255) ttCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACcgc > 1:25821/1‑150 (MQ=255) aaGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGgtg > 1:348538/1‑150 (MQ=255) aGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGgtgt < 2:25821/150‑1 (MQ=255) gTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGtcttc < 2:276973/150‑1 (MQ=255) tGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCgg < 1:701520/150‑1 (MQ=255) aCTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTcgc < 1:477280/139‑1 (MQ=255) aCTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTcgc > 2:477280/1‑139 (MQ=255) cTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGc < 1:656394/150‑1 (MQ=255) cTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAAACCGc > 1:43645/1‑150 (MQ=255) gATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGgccgc < 1:560341/150‑1 (MQ=255) tGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTaggagcgggtttacccgcgaagaagacaccgcggtggatggcacgggcttcgcccgtgttcgcgggcaagcccgctcccacagggatcgc < 2:79500‑M1/150‑91 (MQ=255) ggCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAg < 2:448157/150‑1 (MQ=255) cGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTaggagcgggtttacccgcgaagaagacaccgcggtggatggcacgggcttcgcccgtgttcgcgggcaagcccgctcccacaggg < 2:231393‑M1/139‑86 (MQ=255) cGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTaggagcgggtttacccgcgaagaagacaccgcggtggatggcacgggcttcgcccgtgttcgcgggcaagcccgctcccacaggg > 1:231393‑M1/1‑54 (MQ=255) gAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTaggagcgggtttacccgcgaagaagacaccgcggtggatggcacgggcttcgcccgtgttcgcgggcaagcccgctcccacag < 1:297245‑M1/129‑84 (MQ=255) gAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTaggagcgggtttacccgcgaagaagacaccgcggtggatggcacgggcttcgcccgtgttcgcgggcaagcccgctcccacag > 2:297245‑M1/1‑46 (MQ=255) ggCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAGCTATCTCAAGCCTTGCTg > 2:668148/1‑150 (MQ=255) ttGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAGCTATCTCAAGCCTTGCTGATCAg < 1:668148/150‑1 (MQ=255) ttGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAGCTATCTCAAGCCTTGCTGATCAg > 1:235390/1‑150 (MQ=255) aTGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAGCTATCTCAAGCCTTGCTGATCa > 1:499578/1‑142 (MQ=255) aTGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAGCTATCTCAAGCCTTGCTGATCa < 2:499578/142‑1 (MQ=255) tAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAGCTATCTCAAGCCTTGCTGATCAGGTTGCCCGCATg > 1:98846/1‑150 (MQ=255) gcgATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTacagggatcgcgccagcttttagacattgagcaagggccgttactcccacagcggcccca < 2:79500‑M2/150‑61 (MQ=255) gATCCCTGTgggagcgggtttacccgcgaagaagacaccgcggtggatggcacgggcttcgcccgtgttcgcggg < 1:60442‑M1/75‑67 (MQ=255) gATCCCTGTgggagcgggtttacccgcgaagaagacaccgcggtggatggcacgggcttcgcccgtgttcgcggg > 2:60442‑M1/1‑9 (MQ=255) cccTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTacagggatcgcgccagcttttagacattgagcaagggccgttactcccacagcg < 2:231393‑M2/139‑55 (MQ=255) cccTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTacagggatcgcgccagcttttagacattgagcaagggccgttactcccacagcg > 1:231393‑M2/1‑85 (MQ=255) cTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTacagggatcgcgccagcttttagacattgagcaagggccgttactc > 2:297245‑M2/1‑83 (MQ=255) cTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTacagggatcgcgccagcttttagacattgagcaagggccgttactc < 1:297245‑M2/129‑47 (MQ=255) | GATGGCCAAGGCCATTCAGTGCCATAACAAGCAAGAGCTGGAAGAATTGTTCGAAGGCGTCGAACTGCCGGTGCACTGATTCGGGGGTGATGGGGCCGCTGTGGGAGTAACGGCCCTTGCTCAATGTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTCTTCTTCGCGGGTAAACCCGCTCCTACAGGCCGCCCTAGCTATCTCAAGCCTTGCTGATCAGGTTGCCCGCATGCAACCCGCATT > NC_002947/2655251‑2655539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |