New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5704565 =	24 (0.830)	13 (0.560)	12/212	1.0	43.2%	intergenic (+34/+78)	PP_5006/PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2
	?	NC_002947	5704628 =	15 (0.650)					intergenic (+97/+15)	PP_5006/PP_5007	TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2

CGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5704736‑5704565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgtaggagcgggtttacccgcgaaGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTTG  >  NC_002947/5704628‑5704775                                                                                                                                                                                                                                                                                                                                  CGCTGCGCGTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCATCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTG                                                                                                                                                                            <  1:138504/150‑1            CAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGT                                                                                                                                                                 >  1:497695/1‑150             AGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTT                                                                                                                                                                >  1:327828/1‑150                    ACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGC                                                                                                                                                         <  1:536767/150‑1                       GCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                      <  1:417014/150‑1                          CCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAA                                                                                                                                                   <  2:327828/150‑1                                  TGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTAC                                                                                                                                                             <  2:412989/132‑1                                  TGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTAC                                                                                                                                                             >  1:412989/1‑132                                                                   ACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGA                                                                                                                                                    >  1:462930/1‑108                                                                   ACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGA                                                                                                                                                    <  2:462930/108‑1                                                                                                                          CCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAATGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGC                                                   >  1:708704/1‑150                                                                                                                          CCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGT                                                                                                >  2:257349/1‑105                                                                                                                          CCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGT                                                                                                <  1:257349/105‑1                                                                                                                            CGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAG                                                 >  1:471845/1‑150                                                                                                                            CGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTG                                                                                                          <  2:66036/93‑1                                                                                                                            CGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTG                                                                                                          >  1:66036/1‑93                                                                                                                             GCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGG                                                                                  >  1:434378/1‑116                                                                                                                             GCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGG                                                                                  <  2:434378/116‑1                                                                                                                                       GATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTG                                      >  2:329975/1‑150                                                                                                                                               AAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGG                              <  2:708704/150‑1                                                                                                                                                    TTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTG                         >  1:205438/1‑150                                                                                                                                                          GAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCG                                                                   <  2:351422/102‑1                                                                                                                                                          GAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCG                                                                   >  1:351422/1‑102                                                                                                                                                            GCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTG                 >  2:680140/1‑150                                                                                                                                                                       CGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCG       >  2:410937/1‑149                                                                                                                                                                       CGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCG       <  1:410937/149‑1                                                                                                                                                                         CGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTT    <  2:471845/150‑1                                                                                                                                                                          GAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTT   <  1:678911/150‑1                                                                                                                                                                          GAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTT   <  2:536767/150‑1                                                                                                                                                                          GAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTT   >  2:678911/1‑150                                                                                                                                                                           AAGGAGGCGAAGCGGTTTCAGAGCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTCGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTTG  >  2:723299/1‑150                                                                                                                                                                                                                                                                                                                                  CGCTGCGCCTGCAGCGACCACAGCACCGGCAACTGCCGCCACCCCGGCCAGCAGCACGCCGTCGGCACCGACTGGCACCGGTACCCTGATCTGATACCGCGTCGCCTTCTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5704736‑5704565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgtaggagcgggtttacccgcgaaGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGCTGTGGTCGCTGCAGGCGCAGCGCTGGCAGCTGGTGCTGCTGGTTTGGCCGCTGCCGGTTTG  >  NC_002947/5704628‑5704775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.