| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5704565 = | 24 (0.830) | 13 (0.560) | 12/212 | 1.0 | 43.2% | intergenic (+34/+78) | PP_5006/PP_5007 | TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2 |
| ? | NC_002947 | 5704628 = | 15 (0.650) | intergenic (+97/+15) | PP_5006/PP_5007 | TetR family transcriptional regulator/polyhydroxyalkanoate granule‑associated protein GA2 | |||||
CGAGGGGGATGTGGGGATCGTGGTGTATCAGGTGATGATGCTGGTGGCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGC > NC_002947/5704417‑5704714 | caaaccggcagcggccaaaccagcagcaccagctgcgagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgctctgaaaccgcttcgcctcctt > 2:723299‑M1/149‑150 (MQ=255) aaaccggcagcggccaaaccagcagcaccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcttc < 2:536767‑M1/3‑1 (MQ=255) aaaccggcagcggccaaaccagcagcaccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcttc < 1:678911‑M1/3‑1 (MQ=255) aaaccggcagcggccaaaccagcagcaccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcttc > 2:678911‑M1/148‑150 (MQ=255) aaccggcagcggccaaaccagcagcaccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTcg < 2:471845‑M1/4‑1 (MQ=255) cggcagcggccaaaccagcagcaccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTcgcg > 2:410937‑M1/144‑149 (MQ=255) cggcagcggccaaaccagcagcaccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTcgcg < 1:410937‑M1/6‑1 (MQ=255) gtgGGGATCGTGGTGTATCAGGTGATGATGCTGGTGGCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTaaa < 1:40388/150‑1 (MQ=255) caaaccagcagcaccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGc > 2:680140‑M1/134‑150 (MQ=255) gtgtATCAGGTGATGATGCTGGTGGCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCACTCCTACa > 2:81882/1‑150 (MQ=255) tgtATCAGGTGATGATGCTGGTGGCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACaa < 1:129952/150‑1 (MQ=255) ggtATCAGGTGATGATGCTGGTGGCGCCGCATCTGCAGGCCCAGGCCAGAGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCCGGTAAACCCGCTCCTACaa < 2:564802/149‑1 (MQ=255) cagcaccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACaa > 1:205438‑M1/126‑150 (MQ=255) ccagctgccagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGttt < 2:708704‑M1/30‑1 (MQ=255) ggTGATGATGCTGGTGGCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTCCAAGGTTTgg > 2:476619/1‑150 (MQ=255) atgatgCTGGTGGCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCa < 2:681294/150‑1 (MQ=255) cagcgctgcgcctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATc > 2:329975‑M1/113‑150 (MQ=255) gggCGCCGCATCTGCAGGCACAGGCCCGGGCGGCGGCGGAGCAGCTTGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGa < 2:301586/149‑1 (MQ=255) ggCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGgc > 2:83224/1‑136 (MQ=255) ggCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGgc < 1:83224/136‑1 (MQ=255) ctgcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCg > 1:471845‑M1/102‑150 (MQ=255) gccgcAGCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCCGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCCTGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCgg < 1:591789/150‑1 (MQ=255) gcagcgaccacagcaccggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgcattcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCggg > 1:708704‑M1/100‑150 (MQ=255) tCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTAc < 1:447442/150‑1 (MQ=255) cTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCACCTGGCAGTGAAGTACCTGGACGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGTCGACGCATTCGCGGGTAACCCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTAcc < 1:81882/150‑1 (MQ=255) ccaggcccGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCt < 2:224550/103‑1 (MQ=255) ccaggcccGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCt > 1:224550/1‑103 (MQ=255) cggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTc > 1:351422‑M1/84‑102 (MQ=255) cggcaactgccgccaccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTc < 2:351422‑M1/19‑1 (MQ=255) atgcccGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGAGCATCTTGTAGAAGCGGGGTTACCCGCGaagaag > 1:389468/3‑150 (MQ=255) ccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGc < 2:434378‑M1/48‑1 (MQ=255) ccccggccagcagcacgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGc > 1:434378‑M1/69‑116 (MQ=255) gcagcTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTatcagatca < 2:549868/150‑1 (MQ=255) acgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCggg > 2:257349‑M1/55‑105 (MQ=255) acgccgtcggcaccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCggg < 1:257349‑M1/51‑1 (MQ=255) gTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAg > 2:167073/1‑150 (MQ=255) caccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCg > 1:66036‑M1/45‑93 (MQ=255) caccgactggcaccggtaccctgatctgataccgcgtcgccttcTTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCg < 2:66036‑M1/49‑1 (MQ=255) gAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGACGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGc < 1:167073/150‑1 (MQ=255) aTGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCg < 1:211251/150‑1 (MQ=255) tGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATTAGGGTACCGGTGCCAGTCGGTGCCGACGGCGtgctgc < 1:587775/143‑1 (MQ=255) tGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGtgctgc > 2:587775/1‑143 (MQ=255) gTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCggg > 2:497695/1‑150 (MQ=255) ttGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGCGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTggcc > 1:623648/1‑149 (MQ=255) cGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCg < 1:5179/150‑1 (MQ=255) ttcTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCgg < 2:327828‑M1/147‑1 (MQ=255) tcTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGt < 2:462930‑M1/106‑1 (MQ=255) tcTTCGCGGGTAAACCCGCTCCTACAAGATGCGCCAAACCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGt > 1:462930‑M1/3‑108 (MQ=255) TTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGc < 1:417014‑M1/150‑1 (MQ=255) | CGAGGGGGATGTGGGGATCGTGGTGTATCAGGTGATGATGCTGGTGGCGCCGCATCTGCAGGCCCAGGCCCGGGCGGCGGCGGAGCAGCTGGCAGTGAAGTACCTGGAGGGGTAGGCCTGCTGGAGATGTAGTGTTGCAGCCGACGCATTCGCGGGTAAACCCGCTCCTACAAGGTTTGGCGCATCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCGACGCGGTATCAGATCAGGGTACCGGTGCCAGTCGGTGCCGACGGCGTGCTGCTGGCCGGGGTGGCGGCAGTTGCCGGTGC > NC_002947/5704417‑5704714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |