New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2264038 =	21 (0.730)	6 (0.220)	6/252	2.7	24.0%	intergenic (+167/‑56)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
	?	NC_002947	2264075 =	18 (0.650)					intergenic (+204/‑19)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta

GCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCC  >  NC_002947/2263890‑2264187                                                                                                                                                     |                                                                                                                                                      cagctccggacgatacagcacggcctcgcaggacgggcacttgtgccacaggccctcaggcaccgagctctttttcacctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattgg                                                                                                                                                      >  1:330840‑M1/149‑150 (MQ=255)  agctccggacgatacagcacggcctcgcaggacgggcacttgtgccacaggccctcaggcaccgagctctttttcacctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtaatggc                                                                                                                                                     >  2:573344‑M1/148‑150 (MQ=255)              gTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCg                                                                                                                                         >  1:468743/1‑150 (MQ=255)                   cacggcctcgcaggacgggcacttgtgccacaggccctcaggcaccgagctctttttcacctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGAc                                                                                                                                    <  2:170355‑M1/20‑1 (MQ=255)                       tttCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCg                                                                                                                                >  1:235726/1‑150 (MQ=255)                                 cTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCt                                                                                                                      <  2:488188/150‑1 (MQ=255)                                 cTGCGGGCCGAAAGACAGCACCTGTGGCAGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCt                                                                                                                      <  2:371131/150‑1 (MQ=255)                                   gggcacttgtgccacaggccctcaggcaccgagctctttttcacctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGc                                                                                                                    >  1:170355‑M1/115‑150 (MQ=255)                                    cGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGcc                                                                                                                   <  1:520825/150‑1 (MQ=255)                                       gCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAAt                                                                                                                >  2:384544/1‑150 (MQ=255)                                               cacaggccctcaggcaccgagctctttttcacctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTg                                                                                                            >  2:691987‑M1/103‑146 (MQ=255)                                               cacaggccctcaggcaccgagctctttttcacctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTg                                                                                                            <  1:691987‑M1/44‑1 (MQ=255)                                                      cTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGaaagaaag                                                                                                 >  2:460083/1‑150 (MQ=255)                                                                aaaaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAAc                                                                                       >  1:684991/1‑150 (MQ=255)                                                                 aaaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACt                                                                                      <  1:460083/150‑1 (MQ=255)                                                                  aaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTg                                                                                     >  2:306317/1‑150 (MQ=255)                                                                   aaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTgg                                                                                    <  1:384544/150‑1 (MQ=255)                                                                            tAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGaa                                                                           <  2:468743/150‑2 (MQ=255)                                                                              cctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATAc                                                                                                              <  1:554279‑M1/42‑1 (MQ=255)                                                                              cctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATAc                                                                                                              >  2:554279‑M1/72‑113 (MQ=255)                                                                                      gTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGt                                                                               <  1:99104/136‑1 (MQ=255)                                                                                      gTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGt                                                                               >  2:99104/1‑136 (MQ=255)                                                                                                                                   aaaGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAgg                    <  1:306317/150‑1 (MQ=255)                                                                                                                                   aaaGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAgg                    >  1:663458/1‑150 (MQ=255)                                                                                                                                        ttttGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCACCGCCTCGCAATACCGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCtg               <  2:663458/150‑1 (MQ=255)                                                                                                                                              gCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGGGAAAGAAAGCATGAGCAACTGGTTa                                                                                 >  2:39525/1‑78 (MQ=255)                                                                                                                                              gCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGGGAAAGAAAGCATGAGCAACTGGTTa                                                                                 <  1:39525/78‑1 (MQ=255)                                                                                                                                                tCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAAc                                                                       >  1:537077/1‑86 (MQ=255)                                                                                                                                                tCAAGGGCAGGGCAGGGCCGGCGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAAc                                                                       <  2:537077/86‑1 (MQ=255)                                                                                                                                                     GGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGcc  <  2:495097‑M1/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCC  >  NC_002947/2263890‑2264187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.