New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2264038 =	21 (0.730)	6 (0.220)	6/252	2.7	24.0%	intergenic (+167/‑56)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
	?	NC_002947	2264075 =	18 (0.650)					intergenic (+204/‑19)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta

GCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCCCGTCCTGCGAGGCCGTGCTGTATCGTCCGGAGCTG  >  NC_002947/2263928‑2264222                                                                                                                                                    |                                                                                                                                                    gCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAAt                                                                                                                                                   >  2:384544/1‑150 (MQ=255)         cacaggccctcaggcaccgagctctttttcacctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTg                                                                                                                                               >  2:691987‑M1/103‑146 (MQ=255)         cacaggccctcaggcaccgagctctttttcacctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTg                                                                                                                                               <  1:691987‑M1/44‑1 (MQ=255)                cTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGaaagaaag                                                                                                                                    >  2:460083/1‑150 (MQ=255)                          aaaaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAAc                                                                                                                          >  1:684991/1‑150 (MQ=255)                           aaaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACt                                                                                                                         <  1:460083/150‑1 (MQ=255)                            aaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTg                                                                                                                        >  2:306317/1‑150 (MQ=255)                             aaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTgg                                                                                                                       <  1:384544/150‑1 (MQ=255)                                      tAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGaa                                                                                                              <  2:468743/150‑2 (MQ=255)                                        cctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATAc                                                                                                                                                 <  1:554279‑M1/42‑1 (MQ=255)                                        cctcggaacgcatgatcgaagggatcagtttgtcgactaaccagttgctcatgctttctttctccagtattGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATAc                                                                                                                                                 >  2:554279‑M1/72‑113 (MQ=255)                                                gTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGt                                                                                                                  <  1:99104/136‑1 (MQ=255)                                                gTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGt                                                                                                                  >  2:99104/1‑136 (MQ=255)                                                                                             aaaGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAgg                                                       >  1:663458/1‑150 (MQ=255)                                                                                             aaaGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAgg                                                       <  1:306317/150‑1 (MQ=255)                                                                                                  ttttGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCACCGCCTCGCAATACCGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCtg                                                  <  2:663458/150‑1 (MQ=255)                                                                                                        gCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGGGAAAGAAAGCATGAGCAACTGGTTa                                                                                                                    <  1:39525/78‑1 (MQ=255)                                                                                                        gCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGGGAAAGAAAGCATGAGCAACTGGTTa                                                                                                                    >  2:39525/1‑78 (MQ=255)                                                                                                        cagtattggcaggcgggggacggcgtcaccggccctgccctgccAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCtgtg                                                <  1:691987‑M2/102‑1 (MQ=255)                                                                                                        cagtattggcaggcgggggacggcgtcaccggccctgccctgccAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCtgtg                                                >  2:691987‑M2/45‑146 (MQ=255)                                                                                                          tCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAAc                                                                                                          >  1:537077/1‑86 (MQ=255)                                                                                                          tCAAGGGCAGGGCAGGGCCGGCGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAAc                                                                                                          <  2:537077/86‑1 (MQ=255)                                                                                                          gtattggcaggcgggggacggcgtcaccggccctgccctgccAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAgg                                                                               <  1:554279‑M2/71‑1 (MQ=255)                                                                                                          gtattggcaggcgggggacggcgtcaccggccctgccctgccAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAgg                                                                               >  2:554279‑M2/43‑113 (MQ=255)                                                                                                               GGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGcc                                     <  2:495097‑M1/150‑1 (MQ=255)                                                                                                                gcaggcgggggacggcgtcaccggccctgccctgccAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGccc                                    >  1:170355‑M2/37‑150 (MQ=255)                                                                                                                         ggcCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCCCGTCCTGCGa                           <  1:147649/150‑1 (MQ=255)                                                                                                                             ggTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCCCGTCCTGCGAGGcc                       <  2:235726/150‑1 (MQ=255)                                                                                                                                gtcaccggccctgccctgccAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCCCGTCCTGCGAGGCCGTg                    <  2:170355‑M2/130‑1 (MQ=255)                                                                                                                                                 gccATTACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCCCGTCCTGCGAGGCCGTGCTGTATCGTCCGGAGCt   >  2:573344‑M2/4‑150 (MQ=255)                                                                                                                                                  ccAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCCCGTCCTGCGAGGCCGTGCTGTATCGTCCGGAGCTg  >  1:330840‑M2/3‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGTGAAAAAGAGCTCGGTGCCTGAGGGCCTGTGGCACAAGTGCCCGTCCTGCGAGGCCGTGCTGTATCGTCCGGAGCTG  >  NC_002947/2263928‑2264222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.