| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3581709 | 19 (0.660) | 8 (0.280) | 6/260 | 2.8 | 29.8% | coding (762/942 nt) | PP_3160 | hypothetical protein |
| ? | NC_002947 | = 3581745 | 19 (0.670) | coding (798/942 nt) | PP_3160 | hypothetical protein | |||||
TTCGACAGTACCCTCCCAGCCAGGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACC > NC_002947/3581560‑3581856 | ttCGACAGTACCCTCCCAGCCAGGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAA > 1:395350‑M1/1‑150 (MQ=255) aGTACCCTCCCAGCCAGGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAACTGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAAtgtctc > 2:462316‑M1/1‑144 (MQ=255) aGTACCCTCCCAGCCAGGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAACAGCCGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAAtgtctc > 2:462172‑M1/1‑144 (MQ=255) agccagGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGc < 1:170992/150‑1 (MQ=255) gccagGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGcc > 1:362489/1‑150 (MQ=255) ccagGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGccc > 2:475353/1‑150 (MQ=255) agGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCaa < 2:702670/150‑1 (MQ=255) gATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAagc > 2:465624/1‑150 (MQ=255) aaaCCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGACACATTGCa < 2:362489/150‑1 (MQ=255) gTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCagg > 1:181995/1‑127 (MQ=255) gTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCagg < 2:181995/127‑1 (MQ=255) cAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAAtgtctcccgggctgcttgggcatccaccgggagacgttccttctcaaagtgctttacagccatgttaaa < 1:462172‑M1/150‑70 (MQ=255) cAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAAtgtctcccgggctgcttgggcatccaccgggagacgttccttctcaaagtgctttacagccaggttaaa < 1:462316‑M1/150‑70 (MQ=255) aGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGCGGATACGCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAACCAATGGGTTg > 1:191732/1‑150 (MQ=255) aaaGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGaca < 1:210302/150‑1 (MQ=255) aaGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAAt < 1:396501‑M1/73‑2 (MQ=255) aaGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAAt > 2:396501‑M1/1‑72 (MQ=255) gctggctgGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCt < 1:426047/150‑1 (MQ=255) aaaGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAAtgtctcccgggctgcttgggcatccaccgg > 2:61353‑M1/1‑50 (MQ=255) aaaGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAAtgtctcccgggctgcttgggcatccaccgg < 1:61353‑M1/80‑31 (MQ=255) aaaGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGAtttt > 1:169804/1‑150 (MQ=255) cAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGa < 2:395350/150‑1 (MQ=255) agagCGAATCGTTTTAACCTGGCTGTAAAGCACTATGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGaa > 2:205582/1‑150 (MQ=255) cGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGc < 1:465624/150‑1 (MQ=255) tttAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACAttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgctg < 1:462316‑M2/150‑82 (MQ=255) tttAACATGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACAttccttctcaaagtgctttacagccaggttaaaacgattcgctctgctttggaaccagccagcagctcgctttagtcgctg < 1:462172‑M2/150‑82 (MQ=255) cTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGaa > 2:400825/1‑150 (MQ=255) aGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGgt < 2:1637/64‑1 (MQ=255) aGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGgt > 1:1637/1‑64 (MQ=255) gAACGTCTCCCAGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTAcc < 1:475353/150‑1 (MQ=255) | TTCGACAGTACCCTCCCAGCCAGGATAAAACACGCCAAAAGAAACCAATCGTGGCACCCAAATGACGTACAGCGACTAAAGCGAGCTGCTGGCTGGTTCCAAAGCAGAGCGAATCGTTTTAACCTGGCTGTAAAGCACTTTGAGAAGGAACGTCTCCCGGTGGATGCCCAAGCAGCCCGGGAGACATTGCAGGAGGTGTTAAGTATCAAACAATGGGTTGATCGACACCTGGTAGCTGCAAAAGGATTTTTAGAAAAGCGTGAGTTGTTCGAAGCATTGCCATTTTCTGAAGTTACC > NC_002947/3581560‑3581856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |