New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4969573 =26 (1.510)4 (0.260) 4/252 1.5 14.1% coding (715/2064 nt) fliC flagellin
?NC_002947 = 4969569 25 (1.610)coding (719/2064 nt) fliC flagellin
Rejected: Frequency below/above cutoff threshold.

AAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTGGTACCACCACCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4969731‑4969573
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaccaccaccaTCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCG  <  NC_002947/4969569‑4969432
                                                                                                                                                                                                                                                                                                            
AAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTGGTACCA                                                                                                                                                     <  2:112014/150‑1
                                         AATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTGGTACCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGAT                                                                                                            <  2:338595/150‑1
                                                           GCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGATACGATCAAGGAAAACAACCACCACCATCGCTGCTGCGGCAGCCGACACCCTGCAGGATGTGGTTGACAATATC                                                                                             >  1:316719/1‑150
                                                                               AGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTGGTACCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGG                                                                      >  2:312662/1‑150
                                                                                                    GCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTGGTACCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAG                                                 <  1:312662/150‑1
                                                                                                                                                      CCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCG  >  1:332633/1‑150
                                                                                                                                                                                                                                                                                                            
AAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTGGTACCACCACCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4969731‑4969573
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaccaccaccaTCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCG  <  NC_002947/4969569‑4969432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.