New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4969573 =	26 (1.510)	4 (0.260)	4/252	1.5	14.1%	coding (715/2064 nt)	fliC	flagellin
	?	NC_002947	= 4969569	25 (1.610)					coding (719/2064 nt)	fliC	flagellin
Rejected: Frequency below/above cutoff threshold.

AAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTG‑GTACCACCACCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4969731‑4969573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaccaccaccaTCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCG  <  NC_002947/4969569‑4969432                                                                                                                                                                                                                                                                                                              AAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTG‑GTACCA                                                                                                                                                     <  2:112014/150‑1                                          AATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTG‑GTACCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGAT                                                                                                            <  2:338595/150‑1                                                            GCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGATACGATCAAGGAAAACAACCACCACCATCGCTGCTGCGGCAGCCGACACCCTGCAGGATGTGGTTGACAATATC                                                                                             >  1:316719/1‑150                                                                                AGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTG‑GTACCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGG                                                                      >  2:312662/1‑150                                                                                                     GCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTG‑GTACCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAG                                                 <  1:312662/150‑1                                                                                                                                                       CCACCACCACCATCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCG  >  1:332633/1‑150                                                                                                                                                                                                                                                                                                              AAGCCAGCGTCACCGGTGCAGCCGGTAAGTTCGGCACCAACAATGCTGGCAGCACTTCTGCTTCGGTTGTGGGTACTGCAGGCGCGGGCGTATTTGATAAGCCGACCATCGGTGCTGCTGCCGGTAACTTGGTGCT‑‑GAACGTTG‑GTACCACCACCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4969731‑4969573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaccaccaccaTCGCTGCTGCGGCAGGCGACACCCTGCAGGATGTGGTTGACAATATCAACCTGGAAACTAGCAATACCGGTGTTACCGCTAGCATTGACAGCGCCACTGGTGCACTGAAGCTCGACGGCACCCAGGCATTCACCATCG  <  NC_002947/4969569‑4969432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.