| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5105810 = | 47 (1.280) | 8 (0.230) | 7/262 | 3.1 | 16.0% | coding (2350/3021 nt) | ydiJ | putative oxidoreductase |
| ? | NC_002947 | 5105836 = | 39 (1.100) | coding (2324/3021 nt) | ydiJ | putative oxidoreductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAGCGCGAGCGCAGCATCGTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5105835‑5105810‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGGGTCAGGGTAGCCTGGAAGTTGAAGCGGCTGATCAGCGGGCTGTCGACCATGCCCACCTTGTCGGCCAGCAGCTGGCTCACCCACTTCGAGCCCAT > NC_002947/5105836‑5105984 CCAGCGCGAGCGCAGCATCGTGCTGGGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGGGTCAGGGTAGCCTGGAAGTTGAAGCGGCTGATCAGCGGGCTGTCGACCATGCCCACCTTGT > 1:31749/1‑141CCAGCGCGAGCGCAGCATCGTGCTGGGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGGGTCAGGGTAGCCTGGAAGTTGAAGCGGCTGATCAGCGGGCTGTCGACCATGCCCACCTTGT < 2:31749/141‑1 CAGCGCGAGCGCAGCATCGTGCTGGGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGGGTCAGGGTAGCCTGGAAGTTGAAGCGGCTGATCAGCGGGCTGTCGAC < 1:373548/126‑1 CAGCGCGAGCGCAGCATCGTGCTGGGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGGGTCAGGGTAGCCTGGAAGTTGAAGCGGCTGATCAGCGGGCTGTCGAC > 2:373548/1‑126 CAGCGCGAGCGCAGCATCGTGCTGGGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGG > 1:337447/1‑79 CAGCGCGAGCGCAGCATCGTGCTGGGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGG < 2:337447/79‑1 GCGCGAGCGCAGCATCGTGCTGGGCCGGGGTCAGCTCGCGCAGG < 1:302738/44‑1 GCGCGAGCGCAGCATCGTGCTGGGCCGGGGTCAGCTCGCGCAGG > 2:302738/1‑44 GGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGGGTCAGGGTAGCCTGGAAGTTGAAGCGGCTGATCAGCGGGCTGTCGACCATGCCCACCTTGTCGGCCAGCAGCTGGCTCACCCACTTCGAGCCCAT > 2:667155/1‑150 CCAGCGCGAGCGCAGCATCGTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5105835‑5105810‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggGCCGGGGTCAGCTCGCGCAGGGCCGGCACCGTGGCCATGCCAACGCGACAACGGGTCAGGGTAGCCTGGAAGTTGAAGCGGCTGATCAGCGGGCTGTCGACCATGCCCACCTTGTCGGCCAGCAGCTGGCTCACCCACTTCGAGCCCAT > NC_002947/5105836‑5105984 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |