New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2238980	17 (0.740)	4 (0.180)	4/238	NT	17.7%	coding (800/1164 nt)	PP_1976	HlyD family secretion protein
	?	NC_002947	= 2239010	21 (0.950)					coding (770/1164 nt)	PP_1976	HlyD family secretion protein

CCGGCCTTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2238826‑2238980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccaTCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGCGCGCGGAACTGTTG  <  NC_002947/2239010‑2238862                                                                                                                                                                                                                                                                                                                  CCGGCCTTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTG                                                                                                                                                            >  1:523911/1‑150  CGGCCTTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGC                                                                                                                                                           <  1:113222/150‑1                                   AACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCATCGGCCAGCGCAATGCGCGCAATGGCCAG                                                                                                                          >  2:171735/1‑150                                      AACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCATCGGCCAGCGCAATGCGCGCAATGGCCAGGTG                                                                                                                       >  1:497999/1‑150                                               GCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCC                                                                                                              <  2:497999/150‑1                                                  CGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGCGCAGGCCGGC                                                                                                           <  1:171735/150‑1                                                                                                                                                          CATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGCGCGCGGAACTGTT   <  1:532411/150‑1                                                                                                                                                          CATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGC                <  1:453339/137‑1                                                                                                                                                          CATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGC                >  2:453339/1‑137                                                                                                                                                           ATCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGCGCGCGGAACTGTTG  >  2:71545/1‑150                                                                                                                                                                                                                                                                                                                  CCGGCCTTCGATCGGTGTGTCGGGGTAGCTGTCGAACAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2238826‑2238980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccaTCGGCCAGCGCAATGCGCGCAATGGCCAGGTGGTGCAGGCCGGCGCCTACCTGCTGTCGATCGTGCCGGATGAAGACATCTGGGTGCAGGCCAACTTCAAGGAAACCCAGATCGGCCGCATGCACCCCGGCCAGCGCGCGGAACTGTTG  <  NC_002947/2239010‑2238862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.