New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2238980	17 (0.740)	4 (0.180)	4/238	NT	17.7%	coding (800/1164 nt)	PP_1976	HlyD family secretion protein
	?	NC_002947	= 2239010	21 (0.950)					coding (770/1164 nt)	PP_1976	HlyD family secretion protein

CAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCGGTGACCTGCTGGCGCTGGCTTTGCAGGT  >  NC_002947/2238862‑2239157                                                                                                                                                     |                                                                                                                                                    caacaGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAt                                                                                                                                                    >  2:71545‑M2/1‑149 (MQ=255)  aacaGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtg                                                                                                                                                   <  1:532411‑M2/150‑3 (MQ=255)               gcTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCCCCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCg                                                                                                                                      >  2:259245/1‑150 (MQ=255)               gcTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtg                                                                                                                                                   <  1:453339‑M2/137‑3 (MQ=255)               gcTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtg                                                                                                                                                   >  2:453339‑M2/1‑135 (MQ=255)                cTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCgg                                                                                                                                     <  2:448271/150‑1 (MQ=255)                                      aTCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTc                                                                                                               >  2:547599/1‑150 (MQ=255)                                           ggTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGtt                                                                                                          >  1:541156/1‑150 (MQ=255)                                                  ttGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGAATTTCGCAGCGGGTCAGGTTCAGTTCg                                                                                                   <  2:556171/150‑1 (MQ=255)                                                             cTGCACCCAGATGTCTTCCTCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAg                                                                                        >  2:869/1‑150 (MQ=255)                                                                 aCCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCg                                                                                    <  1:250412/150‑1 (MQ=255)                                                                   ccAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGt                                                                                  >  2:110725/1‑150 (MQ=255)                                                                              cATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTgg                                                                       <  1:391162/150‑1 (MQ=255)                                                                                    gCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGAttt                                                                 <  1:547599/150‑1 (MQ=255)                                                                                               agcagGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAgg                                                      <  2:523911/150‑1 (MQ=255)                                                                                                    gTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCtt                                                 >  2:24972/1‑150 (MQ=255)                                                                                                    gTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCtt                                                 <  1:110725/150‑1 (MQ=255)                                                                                                          gcCGGCCTGCGCCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcg                                           <  1:171735‑M2/150‑107 (MQ=255)                                                                                                          gcCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTc                                           >  2:195706/1‑150 (MQ=255)                                                                                                          gcCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTc                                           >  2:333180/1‑150 (MQ=255)                                                                                                             ggCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGAtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcgcgc                                        <  2:497999‑M2/150‑110 (MQ=255)                                                                                                                cTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTc                                                                                                               <  2:3239/76‑1 (MQ=255)                                                                                                                cTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTc                                                                                                               >  1:3239/1‑76 (MQ=255)                                                                                                                      caccTGGCCATTGCGCGCATTGCGCTGGCCGAtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcgcgcggaactgtt                               >  1:497999‑M2/1‑32 (MQ=255)                                                                                                                       accTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCg                              >  1:241343/1‑150 (MQ=255)                                                                                                                         cTGGCCATTGCGCGCATTGCGCTGGCCGAtggtgcaggccggcgcctacctgctgtcgatcgtgccggatgaagacatctgggtgcaggccaacttcaaggaaacccagatcggccgcatgcaccccggccagcgcgcggaactgttgtt                            >  2:171735‑M2/1‑29 (MQ=255)                                                                                                                         cTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGAttt                                                                 >  1:575217/1‑113 (MQ=255)                                                                                                                         cTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGAttt                                                                 <  2:575217/113‑1 (MQ=255)                                                                                                                                               tGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCGGTGACCTGCTGGCGCTGGCTTTGc      <  1:24972/150‑1 (MQ=255)                                                                                                                                                   cGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCGGTGACCTGCTGGCGCTGGCTTTGCAGGt  <  2:541156/150‑1 (MQ=255)                                                                                                                                                    gATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCGGTGACCTGCTGGCGCTGGCTTTGCAGGt  <  1:560772/149‑1 (MQ=255)                                                                                                                                                    gATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCGGTGACCTGCTGGCGCTGGCTTTGCAGGt  >  2:560772/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAACAGTTCCGCGCGCTGGCCGGGGTGCATGCGGCCGATCTGGGTTTCCTTGAAGTTGGCCTGCACCCAGATGTCTTCATCCGGCACGATCGACAGCAGGTAGGCGCCGGCCTGCACCACCTGGCCATTGCGCGCATTGCGCTGGCCGATGGTGCCGCTGATCGGGGCATGGATTTCGCAGCGGGTCAGGTTCAGTTCGGCCTGGGCCAGGTCGGTGCGGGCATTGGCGATTTGCGCATCGAGGCGCTTGAGTTCGGCGTTCAGGGCGGTGACCTGCTGGCGCTGGCTTTGCAGGT  >  NC_002947/2238862‑2239157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.