New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2359601 | 28 (1.210) | 4 (0.180) | 3/238 | NT | 12.8% | coding (516/924 nt) | PP_2074 | LysR family transcriptional regulator |
? | NC_002947 | = 2359606 | 28 (1.270) | coding (521/924 nt) | PP_2074 | LysR family transcriptional regulator |
ACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2359468‑2359601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgGCTTGCAGGGTGCGTAGCACCTTGCGTTTGGCATTGGCGGGCAGGCCCTTGGTCTGGCTGATACCCACCGTCACGTCGCCCGCCGCCAGCAGGTCCGGAATGCGCCAGTAGTCCACATGCTGCAC < NC_002947/2359606‑2359482 ACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGGCTTGCAGGGTGCGTA < 1:1405/150‑1 AAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGGCTTGCAGGGTGCGTA < 1:378049/61‑1 AAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGGCTTGCAGGGTGCGTA > 2:378049/1‑61 CAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTGCGTAGCACCTTGCGTTTGGCATTGGCGGGCAGGCCCTTGGTCTGGCTGATACCCACCGTCACGTCGCCCGCCGCCAGCAGGTCCGGAATGCGCCAGTAGTCCACATGCTGCAC > 2:544041/1‑150 ACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2359468‑2359601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgGCTTGCAGGGTGCGTAGCACCTTGCGTTTGGCATTGGCGGGCAGGCCCTTGGTCTGGCTGATACCCACCGTCACGTCGCCCGCCGCCAGCAGGTCCGGAATGCGCCAGTAGTCCACATGCTGCAC < NC_002947/2359606‑2359482 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |