New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2359601	28 (1.210)	4 (0.180)	3/238	NT	12.8%	coding (516/924 nt)	PP_2074	LysR family transcriptional regulator
	?	NC_002947	= 2359606	28 (1.270)					coding (521/924 nt)	PP_2074	LysR family transcriptional regulator

ACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGACTGGTTGAAAGACATCGGCCGTG  >  NC_002947/2359468‑2359740                                                                                                                                      |                                                                                                                                            aCGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGgcttgcagggtgcgta                                                                                                                             <  1:1405‑M1/150‑17 (MQ=255)           ggtCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACaa                                                                                                                   <  1:210738/150‑1 (MQ=255)               gTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGGCTTGcagggtgcgtagcaccttgcgtttg                                                                                                               >  2:544041‑M2/1‑125 (MQ=255)                                 tGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTg                                                                                             >  2:403484/1‑150 (MQ=255)                                 tGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTg                                                                                             <  1:403484/150‑1 (MQ=255)                                   gcgcATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCACACTGTTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGa                                                                                           >  1:163144/1‑150 (MQ=255)                                      cATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGTTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCAAGCACGCCGCTTTCAATGGGTGa                                                                                        <  2:471583/150‑1 (MQ=255)                                      cATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGAGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGa                                                                                        >  2:51920/1‑150 (MQ=255)                                            ggACCTGCTGGCGGCGGGCGACGTGACGGTGGGTCTCAGCGGGCATCNGCATGTTTTCGCCAAGGCGAAACTGAATGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTg                                                                                  >  1:11849/1‑150 (MQ=255)                                                ctgctgGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCaa                                                                              >  2:480600/1‑150 (MQ=255)                                                                          ggggATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCAAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTcgccaac                                                    >  2:168839/1‑150 (MQ=255)                                                                               tCAGCCAGACCAAGGGCCTGCCCGCCAATGACAAACGCAAGGTGCTACACACCATGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTcgccaaccgcca                                               >  1:95244/1‑150 (MQ=255)                                                                                       aCCAAGGGGCTGCCCGCCAATGGCAAACGCGAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCTACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAg                                       <  2:11849/150‑1 (MQ=255)                                                                                        ccAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAgg                                      >  1:412275/1‑150 (MQ=255)                                                                                        ccAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAgg                                      >  1:272174/1‑150 (MQ=255)                                                                                          aaGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGgcttgcagggtgcgta                                                                                                                             >  2:378049‑M1/1‑45 (MQ=255)                                                                                          aaGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGgcttgcagggtgcgta                                                                                                                             <  1:378049‑M1/61‑17 (MQ=255)                                                                                           agtgCCTGCCCCCCACTATCAAACCCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGCATGAGTTTTGCCAACGTCCGCATGTTCAGGTGTCGCCAACCGCCAACCCCCAGGgtg                                   <  2:95244/147‑1 (MQ=255)                                                                                             ggCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTg                                                                                             >  2:117738/1‑90 (MQ=255)                                                                                             ggCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTg                                                                                             <  1:117738/90‑1 (MQ=255)                                                                                                   cccGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCAGGCCGACAATTCCAGCACGTCGCTTTAGCTGGATGATGGTTGCCAACGTTCTCGTTGGCAGTGTGGGCCAACCGCCAACACCCAGGGTGTGGTCGAt                           <  1:168839/150‑1 (MQ=255)                                                                                                          aTGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGACTGGt                    >  1:429971/1‑150 (MQ=255)                                                                                                           tGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGACTGGtt                   <  2:91076/150‑1 (MQ=255)                                                                                                              cAAACGCAAGGTGCTACGCACCCTGcaagccagggtgcgtagcaccttgcgtttggcattggcgggcaggcccttggtctggctgatacccaccgtcacgtcgcccgccgccagcaggtccggaatgcgccagtagtccacatgctgcac                >  2:544041‑M1/1‑25 (MQ=255)                                                                                                               aaaCGCACGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGGCAACGTACGCATGTCCAGGTTTCGCCAACCGCCAACCCCCAGGGTGTGGTCGATGATTGGTTGaaa               <  2:92271/150‑1 (MQ=255)                                                                                                               aaaCGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGACTGGTTGaaa               <  1:355416/150‑1 (MQ=255)                                                                                                               aaaCGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGACTGGTTGaaa               <  2:412275/150‑1 (MQ=255)                                                                                                                aaCGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTcgc                                                        >  2:133499/1‑108 (MQ=255)                                                                                                                aaCGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTcgc                                                        <  1:133499/108‑1 (MQ=255)                                                                                                                     aaGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGAt                           <  2:548897/132‑1 (MQ=255)                                                                                                                     aaGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGAt                           >  1:548897/1‑132 (MQ=255)                                                                                                                     aaGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGACTGGTTGAAAGACATc         >  2:122120/1‑150 (MQ=255)                                                                                                                            tACGCACCCTGCAAGCcagggtgcgtagcaccttgcgtttggcattggcgggcaggcccttggtctggctgatacccaccgtcacgtcgcccgccgccagcaggtccggaatgcgccagtagtccacatgctgcacgaccaccaccacgt  <  1:1405‑M2/150‑135 (MQ=255)                                                                                                                            tACGCACCCTGCAAGCcagggtgcgtagcaccttgcgtttggcattggcgggcaggccctt                                                                                           >  2:378049‑M2/1‑16 (MQ=255)                                                                                                                            tACGCACCCTGCAAGCcagggtgcgtagcaccttgcgtttggcattggcgggcaggccctt                                                                                           <  1:378049‑M2/61‑46 (MQ=255)                                                                                                                            tACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGACTGGTTGAAAGACATCGGCCGTg  >  2:19007/1‑150 (MQ=255)                                                                                                                                      |                                                                                                                                            ACGTGGTGGTGGTCGTGCAGCATGTGGACTACTGGCGCATTCCGGACCTGCTGGCGGCGGGCGACGTGACGGTGGGTATCAGCCAGACCAAGGGCCTGCCCGCCAATGCCAAACGCAAGGTGCTACGCACCCTGCAAGCCAGGGTAGTGCGGGCCGACAAGTCCAGCACGCCGCTTTCACTGGATGAGTTTTGCCAACGTCCGCATGTCCAGGTTTCGCCAACCGCCAACACCCAGGGTGTGGTCGATGACTGGTTGAAAGACATCGGCCGTG  >  NC_002947/2359468‑2359740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.