New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2436654 = | 31 (1.340) | 3 (0.140) | 3/230 | NT | 9.6% | intergenic (+189/‑470) | PP_2134/fadB | transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
? | NC_002947 | 2436709 = | 28 (1.320) | intergenic (+244/‑415) | PP_2134/fadB | transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
AAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2436707‑2436654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgctttgCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACT > NC_002947/2436709‑2436852 AAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAAT > 1:113170/1‑150 AAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAA > 1:368323/1‑100 AAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAA < 2:368323/100‑1 GCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGA < 1:576389/141‑1 GCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGA > 2:576389/1‑141 GCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACT < 2:90326/150‑1 AAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2436707‑2436654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgctttgCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACT > NC_002947/2436709‑2436852 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |