New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2436654 =	31 (1.340)	3 (0.140)	3/230	NT	9.6%	intergenic (+189/‑470)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	2436709 =	28 (1.320)					intergenic (+244/‑415)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase

GATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACT  >  NC_002947/2436571‑2436852                                                                                                                                           |                                                                                                                                                gATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTgcg                                                                                                                                      >  1:282555/1‑150 (MQ=255)   tGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCa                                                                                                                                    >  1:416877/1‑150 (MQ=255)       gTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGaaa                                                                                                                                >  1:172066/1‑150 (MQ=255)        tttttACTGAAAATTTGCCTCTGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGaaaa                                                                                                                               <  1:615919/150‑1 (MQ=255)              cTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCcag                                                                                                                         <  2:172066/150‑1 (MQ=255)                gAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCcaggc                                                                                                                       >  2:374793/1‑150 (MQ=255)                       tGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTATGCTGCGCAGAAAAGGCCAGGCAGGCCgg                                                                                                                <  2:365199/150‑1 (MQ=255)                               gCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTattca                                                                                                        <  1:374793/150‑1 (MQ=255)                                  aTAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTattcattc                                                                                                     <  1:248295/150‑1 (MQ=255)                                     gAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTcaag                                                                                                  <  2:282555/150‑1 (MQ=255)                                        tctcCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTcaagcaa                                                                                               >  2:387399/1‑150 (MQ=255)                                              aCGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCa                                                                                         <  1:222571/150‑1 (MQ=255)                                                gggggCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAgt                                                                                       <  2:57280/150‑1 (MQ=255)                                                      aTCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCtgctgc                                                                                                                                       >  2:436343/1‑96 (MQ=255)                                                      aTCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCtgctgc                                                                                                                                       <  1:436343/96‑1 (MQ=255)                                                      aTCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTc                                                                                 >  2:323336/1‑150 (MQ=255)                                                              tGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCa                                                                                         <  1:501103/134‑1 (MQ=255)                                                              tGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCa                                                                                         >  2:501103/1‑134 (MQ=255)                                                                gTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGctc                                                                       >  2:58487/1‑150 (MQ=255)                                                                                  gACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGc                                                     >  1:156618/1‑150 (MQ=255)                                                                                  gACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGc                                                     >  1:154566/1‑150 (MQ=255)                                                                                   aCAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCa                                                    <  2:416877/150‑1 (MQ=255)                                                                                     aaagcggcgacttggcaccccaccccttcagggttatgccgagccgccgctttgCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAAt                                                  >  1:113170‑M2/55‑150 (MQ=255)                                                                                      aagcggcgacttggcaccccaccccttcagggttatgccgagccgccgctttgCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTcaa                                                                                                   >  1:368323‑M2/54‑100 (MQ=255)                                                                                      aagcggcgacttggcaccccaccccttcagggttatgccgagccgccgctttgCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTcaa                                                                                                   <  2:368323‑M2/47‑1 (MQ=255)                                                                                                tCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAgt                                                                                       <  2:136708/102‑1 (MQ=255)                                                                                                tCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAgt                                                                                       >  1:136708/1‑102 (MQ=255)                                                                                                   gCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTtgt                                    >  1:90326/1‑150 (MQ=255)                                                                                                   gCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTtgt                                    <  1:58487/150‑1 (MQ=255)                                                                                                          gcTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAAt                             >  2:421808/2‑150 (MQ=255)                                                                                                                      gggtgCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACatgaa                 <  1:421808/150‑1 (MQ=255)                                                                                                                             aaGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCgg          <  2:156618/150‑1 (MQ=255)                                                                                                                               gTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCg        >  1:408138/1‑150 (MQ=255)                                                                                                                                  gccgctttgCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACatgaatga              <  1:576389‑M2/132‑1 (MQ=255)                                                                                                                                  gccgctttgCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACatgaatga              >  2:576389‑M2/10‑141 (MQ=255)                                                                                                                                     gctttgCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACt  <  2:90326‑M2/144‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                GATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGGCTCGGCATAACCCTGAAGGGGTGGGGTGCCAAGTCGCCGCTTTGCGTTCTGCTGCGCAGAAAAGGCCAGGCAGGCCGGGTTATTCATTCAAGCAAGTGCCAGTGTAGTCGCCTTGGCTCTTCGCGCAAGCGCAAAGCAATAAGCCGATGCTTGTGGTCAATCGCTGACATGAATGACCGGCGATCACT  >  NC_002947/2436571‑2436852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.