New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2446426 =	19 (0.820)	3 (0.140)	3/240	NT	13.9%	coding (657/708 nt)	PP_2144	TetR family transcriptional regulator
	?	NC_002947	2446446 =	19 (0.860)					coding (677/708 nt)	PP_2144	TetR family transcriptional regulator

GCAAAGCCATACAGGCACTGGTCAGCAAGGGAGATGCGAAGTAGATCGAAATCGGGCATGGGCGCTAGCTTAGCGGAAGCGCCCCGCCACGCCCAGCCTTCAGGCCTTGGCGGTAGCCGAACCGGTCTTTGTGCGCGGGCGCAGCTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2446576‑2446426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaCAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGC  >  NC_002947/2446446‑2446515                                                                                                                                                                                                                               GCAAAGCCATACAGGCACTGGTCAGCAAGGGAGATGCGAAGTAGATCGAAATCGGGCATGGGCGCTAGCTTAGCGGAAGCGCCCCGCCACGCCCAGCCTTCAGGCCTTGGCGGTAGCCGAACCGGTCTTTGTGCGCGGGCGCAGCTGCGC                                                                         >  2:231457/1‑150                     GTCAGCAAGGGAGATGCGAAGTAGATCGAAATCGGGCATGGGCGCTAGCTTAGCGGAAGCGCCCCGCCACGCCCAGCCTTCAGGCCTTGGCGGTAGCCGAACCGGTCTTTGTGCGCAGCTGCGCCCGCGCACAAAGACCGGTTCGGCTAC                                                     <  2:202678/150‑1                                                                                                                                TTTGTGCGCGGGCGCAGCTGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGC  >  1:251852/1‑94                                                                                                                                TTTGTGCGCGGGCGCAGCTGCGCACAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGC  <  2:251852/94‑1                                                                                                                                                                                                                               GCAAAGCCATACAGGCACTGGTCAGCAAGGGAGATGCGAAGTAGATCGAAATCGGGCATGGGCGCTAGCTTAGCGGAAGCGCCCCGCCACGCCCAGCCTTCAGGCCTTGGCGGTAGCCGAACCGGTCTTTGTGCGCGGGCGCAGCTGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2446576‑2446426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaCAAAGACCGGTTCGGCTACCGCCAAGGCCTGAAGGCTGGGCGTGGCGGGGCGCTTCCGCTAAGCTAGCGC  >  NC_002947/2446446‑2446515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.