New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 279289710 (0.430)4 (0.180) 4/238 NT 29.1% coding (184/240 nt) PP_5524 hypothetical protein
?NC_002947 = 2792919 10 (0.450)coding (206/240 nt) PP_5524 hypothetical protein

AGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2792808‑2792897
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcaTCCTTGGGCTTCTGCCCTTCGCTGCCGAT  <  NC_002947/2792919‑2792891
                                                                                                                       
AGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCATCCTTGGGCTTCTGCCCTTCGCTGCCGA   >  1:91375/1‑118
AGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCATCCTTGGGCTTCTGCCCTTCGCTGCCGA   <  2:91375/118‑1
                                      ATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCATCCTTGGGCTTCTGCCCTTCGCTGCCGAT  >  1:115868/1‑81
                                      ATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCATCCTTGGGCTTCTGCCCTTCGCTGCCGAT  <  2:115868/81‑1
                                                                                                                       
AGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2792808‑2792897
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcaTCCTTGGGCTTCTGCCCTTCGCTGCCGAT  <  NC_002947/2792919‑2792891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.