New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2792897	10 (0.430)	4 (0.180)	4/238	NT	29.1%	coding (184/240 nt)	PP_5524	hypothetical protein
	?	NC_002947	= 2792919	10 (0.450)					coding (206/240 nt)	PP_5524	hypothetical protein

CCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACTG  >  NC_002947/2792770‑2793062                                                                                                                                                      |                                                                                                                                                ccTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGa                                                                                                                                                 >  1:353586/1‑150 (MQ=255)            gCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGagaaga                                                                                                                                      <  1:517725/150‑1 (MQ=255)                                                     gCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAg                                                                                             >  1:268160/1‑150 (MQ=255)                                                                                         aacaaGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTcgtcgc                                                         >  1:381212/1‑150 (MQ=255)                                                                                            aaGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAg                                                      <  1:419419/150‑1 (MQ=255)                                                                                                        cagGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTg                                          <  2:415241/150‑1 (MQ=255)                                                                                                                   cGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTgg                               <  2:328028/150‑1 (MQ=255)                                                                                                                          aTCGGCAGCGAAGGGCAGAAGCCCAAGGAtgccgatggcttcgctcagcgcctgctgggcagccttgttggtgtcgtcgat                                                                                             >  1:115868‑M2/1‑29 (MQ=255)                                                                                                                          aTCGGCAGCGAAGGGCAGAAGCCCAAGGAtgccgatggcttcgctcagcgcctgctgggcagccttgttggtgtcgtcgat                                                                                             <  2:115868‑M2/81‑53 (MQ=255)                                                                                                                           tCGGCAGCGAAGGGCAGAAGCCCAAGGAtgccgatggcttcgctcagcgcctgctgggcagccttgttggtgtcgtcgatggcttgcttggccgactgcgcggcctgatcgagcatct                                                       >  1:91375‑M2/1‑28 (MQ=255)                                                                                                                           tCGGCAGCGAAGGGCAGAAGCCCAAGGAtgccgatggcttcgctcagcgcctgctgggcagccttgttggtgtcgtcgatggcttgcttggccgactgcgcggcctgatcgagcatct                                                       <  2:91375‑M2/118‑91 (MQ=255)                                                                                                                                  cGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCa                <  1:215336/150‑1 (MQ=255)                                                                                                                                   gAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCAt               >  2:158084/1‑150 (MQ=255)                                                                                                                                    aaGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATg              <  2:250905/150‑1 (MQ=255)                                                                                                                                       ggCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGaa           <  2:353586/150‑1 (MQ=255)                                                                                                                                                ccAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGTCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACTg  <  2:381212/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                CCTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACTG  >  NC_002947/2792770‑2793062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.