New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2857832	20 (0.870)	4 (0.190)	4/230	NT	18.4%	intergenic (‑1058/+170)	PP_2509/PP_mr37	hypothetical protein/C4 ncRNA
	?	NC_002947	= 2857840	17 (0.800)					intergenic (‑1066/+162)	PP_2509/PP_mr37	hypothetical protein/C4 ncRNA

ATTCGGTTAGGGCGGATGATAAGATACTATCTGAACTTGCTGCCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2857681‑2857832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcacaggTCAGATC‑G‑CCTGTGCTGACTTGATTGGAGAATCCTTGGTTCTTTGCACGCAATGATGGGATTGGGGGACTTGAACGCATTAGAGCAACAAATCAATTAGT  <  NC_002947/2857840‑2857741                                                                                                                                                                                                                                                                ATTCGGTTAGGGCGGATGATAAGATACTATCTGAACTTGCTGCCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACA                                                                                                          <  2:82925/150‑1                                                                                TAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGACTTGATTGGAGAATCCTTGGTTCTTTGCAC                                                      >  1:518608/1‑121                                                                                TAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGACTTGATTGGAGAATCCTTGGTTCTTTGCAC                                                      <  2:518608/121‑1                                                                                                                     AAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGGTCAGATC‑G‑CCTGTGCTGA                                                                                    <  2:391699/54‑1                                                                                                                     AAAGAACCAAGGATTCTCCAATCAACTCAGCACAGGTCAGATC‑G‑CCTGTGCTGA                                                                                    >  1:391699/1‑54                                                                                                                                                        GTCAGATC‑G‑CCTGTGCTGACTTGATTGGAGAATCCTTGGTTCTTTGCACGCAATGATGGGATTGGGGGACTTGAACGCATTAGAGCAACAAATCAATTAGT  >  1:339970/1‑101                                                                                                                                                        GTCAGATC‑G‑CCTGTGCTGACTTGATTGGAGAATCCTTGGTTCTTTGCACGCAATGATGGGATTGGGGGACTTGAACGCATTAGAGCAACAAATCAATTAGT  <  2:339970/101‑1                                                                                                                                                                                                                                                                ATTCGGTTAGGGCGGATGATAAGATACTATCTGAACTTGCTGCCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2857681‑2857832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcacaggTCAGATC‑G‑CCTGTGCTGACTTGATTGGAGAATCCTTGGTTCTTTGCACGCAATGATGGGATTGGGGGACTTGAACGCATTAGAGCAACAAATCAATTAGT  <  NC_002947/2857840‑2857741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.