| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2857832 | 20 (0.870) | 4 (0.190) | 4/230 | NT | 18.4% | intergenic (‑1058/+170) | PP_2509/PP_mr37 | hypothetical protein/C4 ncRNA |
| ? | NC_002947 | = 2857840 | 17 (0.800) | intergenic (‑1066/+162) | PP_2509/PP_mr37 | hypothetical protein/C4 ncRNA | |||||
GTTAGGGCGGATGATAAGATACTATCTGAACTTGCTGCCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGT > NC_002947/2857686‑2857966 | gTTAGGGCGGATGATAAGATACTATCTGAACTTGCTGCCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑Ga > 1:253156/1‑150 (MQ=255) aCTATCTGAACTTGCTGCCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAg > 1:204411/1‑150 (MQ=255) tCTGAACTTGCTGCCCATATAAAGTCTTGTAACTAATTAATTTCTAGCTCGAAACCGTTCAAATCCCCCAAGCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCt > 1:320880/1‑150 (MQ=255) gAACTTGCTGCCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCg > 2:481291/1‑150 (MQ=255) gctgcCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAAc < 2:320880/150‑1 (MQ=255) ttGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCg > 1:559486/1‑150 (MQ=255) aCTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGAc < 2:339970‑M2/101‑2 (MQ=255) aCTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGAc > 1:339970‑M2/1‑100 (MQ=255) gttgCTCTAATGCGTTCAAGTCGCCCAATCCTATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCTTGCGTTCAACTGCACTCTCCAAGCCCGCCATACCATAAGGtctc > 1:135011/1‑150 (MQ=255) ctAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTAc < 2:204411/150‑1 (MQ=255) tAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGGcgatctgacctgtgctgacttgattggagaatccttggttctttgcac < 2:518608‑M1/121‑49 (MQ=255) tAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGGcgatctgacctgtgctgacttgattggagaatccttggttctttgcac > 1:518608‑M1/1‑73 (MQ=255) ttCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAAccc > 1:16841/1‑150 (MQ=255) gTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGaaa < 1:68616/81‑1 (MQ=255) gTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGaaa > 2:68616/1‑81 (MQ=255) catcatTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTtctc < 1:481291/150‑1 (MQ=255) tGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGaa < 2:16841/150‑1 (MQ=255) gCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATACCCCTGCTTTCCACTGCCCTCTCCAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAGCTCGTGGATTTCGAGTGCTCACTGAAg < 2:253156/150‑1 (MQ=255) gTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGGTCAGATC‑Gctgtgctgacttgattggagaatccttggttctttgcacgcaatgatgggattgggggacttgaacgcatta > 1:518608‑M2/1‑49 (MQ=255) gTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGGTCAGATC‑Gctgtgctgacttgattggagaatccttggttctttgcacgcaatgatgggattgggggacttgaacgcatta < 2:518608‑M2/121‑73 (MQ=255) aaaGAACCAAGGATTCTCCAATCAAGTCAGCACAGGtcagatcgcctgtgctga < 2:391699‑M1/54‑19 (MQ=255) aaaGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGccataccata < 1:148379/99‑1 (MQ=255) aaaGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGccataccata > 2:148379/1‑99 (MQ=255) aaaGAACCAAGGATTCTCCAATCAACTCAGCACAGGtcagatcgcctgtgctga > 1:391699‑M1/1‑36 (MQ=255) aGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAgg > 1:213052/1‑150 (MQ=255) gAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGc < 2:559486/150‑1 (MQ=255) tcCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGt > 2:268838/1‑150 (MQ=255) aTCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGt > 1:339124/1‑150 (MQ=255) aTCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGt < 1:74181/150‑1 (MQ=255) tCAGCACAGG‑C‑GATCTGAcctgtgctgagttgattggagaatccttggttcttt > 1:391699‑M2/1‑18 (MQ=255) tCAGCACAGG‑C‑GATCTGAcctgtgctgacttgattggagaatccttggttcttt < 2:391699‑M2/54‑37 (MQ=255) gtcagatcgcctgtgctgacttgattggagaatccttggttctttgcacgcaatgatgggattgggggacttgaacgcattagagcaacaaatcaattagt < 2:339970‑M1/101‑101 (MQ=255) gtcagatcgcctgtgctgacttgattggagaatccttggttctttgcacgcaatgatgggattgggggacttgaacgcattagagcaacaaatcaattagt > 1:339970‑M1/1‑1 (MQ=255) | GTTAGGGCGGATGATAAGATACTATCTGAACTTGCTGCCCATATAAAGTCTTGTAACTAATTGATTTGTTGCTCTAATGCGTTCAAGTCCCCCAATCCCATCATTGCGTGCAAAGAACCAAGGATTCTCCAATCAAGTCAGCACAGG‑C‑GATCTGACCTGTGCTGAAATAGCCCTGCGTTCAACTGCCCTCTACAAGCCCGCCATACCATAAGGTCTCCAGTACGAGAACCCGTGGATTTCGAGTTCTCACTGAAGCACTCAGGCAGAAACTGCCCGTAGGT > NC_002947/2857686‑2857966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |