New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3540125 | 30 (1.300) | 4 (0.180) | 4/240 | NT | 11.8% | coding (769/1539 nt) | PP_3127 | exopolysaccharide transport protein |
? | NC_002947 | = 3540140 | 31 (1.400) | coding (784/1539 nt) | PP_3127 | exopolysaccharide transport protein |
AAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3540050‑3540125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttgGCCGGGTGCCCTCGGCAACCTTGGTGGCAAGGCCGGCATTGGCCGCAGACAGCTCCAGTTCCAGGTAGCGCAGCTCTTCCTGGGC < NC_002947/3540140‑3540056 AAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGGCCGGGTGCCCTCGGCAACCTTG < 1:230116/99‑1 AAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGGCCGGGTGCCCTCGGCAACCTTG > 2:230116/1‑99 CTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGGCCGGGTGCCCTCGGCAACCTTGGT > 1:317465/1‑83 CTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTGGCCGGGTGCCCTCGGCAACCTTGGT < 2:317465/83‑1 TTGGCCGGGTGCCCTCGGCAACCTTGGTGGCAAGGCCGGCATTGGCCGCAGACAGCTCCAGTTCCAGGAAGAGCTGCGCTACCTGGaa > 1:230561/1‑86 AAGGCTGCCCAGGAAGAGCTGCGCTACCTGGAACTGGAGCTGTCTGCGGCCAATGCCGGCCTTGCCACCAAGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3540050‑3540125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttgGCCGGGTGCCCTCGGCAACCTTGGTGGCAAGGCCGGCATTGGCCGCAGACAGCTCCAGTTCCAGGTAGCGCAGCTCTTCCTGGGC < NC_002947/3540140‑3540056 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |