New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3915143	36 (1.560)	4 (0.180)	4/240	NT	10.1%	coding (68/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
	?	NC_002947	= 3915164	37 (1.670)					coding (89/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein

TTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3914994‑3915143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcTCGGCGCTGTCGCTGCAGCCGGCCAGGGACAGGCTCAGCAA  <  NC_002947/3915164‑3915124                                                                                                                                                                                                   aTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGCCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCACCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGC                                           >  2:558951/2‑150                                  CAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCTCGGCGCTGTCGCTGCAGCCGGCCAGGGACAGG          <  2:306523/150‑1                                            CTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCTCCCGTTGGCGCTCATGGCCTTGCTGAGCCGGTTCGTCTGGCTCGGCGCTGTCGCTGCAGCCGGCCAGGGACAGGCTCAGCAA  <  1:221614/150‑1                                                                                           TACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCTCGGCGCTGTCGCTGCAGCCGGCCAGG                >  1:323154/1‑87                                                                                           TACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGCTCGGCGCTGTCGCTGCAGCCGGCCAGG                <  2:323154/87‑1                                                                                                                                                                                                   TTCACACTCGCCCTACAGGTATTAACAGCCGCCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCC‑‑CTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3914994‑3915143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcTCGGCGCTGTCGCTGCAGCCGGCCAGGGACAGGCTCAGCAA  <  NC_002947/3915164‑3915124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.