New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3915143 | 36 (1.560) | 4 (0.180) | 4/240 | NT | 10.1% | coding (68/1176 nt) | PP_3455 | multidrug RND transporter membrane fusion protein |
? | NC_002947 | = 3915164 | 37 (1.670) | coding (89/1176 nt) | PP_3455 | multidrug RND transporter membrane fusion protein |
CCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCGCAGGCGTGGTGC > NC_002947/3915025‑3915304 | cccAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGaa < 1:132003/150‑1 (MQ=255) gCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGc < 1:364547/150‑1 (MQ=255) gTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCa > 1:151762/1‑150 (MQ=255) tCTGCCTTAGCATATACACGGTCACCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCAc > 1:545496/1‑150 (MQ=255) ttAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCa > 1:90959/1‑150 (MQ=255) gCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGt < 2:56152/150‑1 (MQ=255) cATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTAATGGTCTGGCTGAGCCTGTCCCTGGACGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTg > 1:598973/1‑150 (MQ=255) ataCACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc < 1:130154/150‑1 (MQ=255) cacGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTa > 1:71978/1‑150 (MQ=255) atcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGc > 2:81818/1‑150 (MQ=255) tcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc > 2:71276/1‑136 (MQ=255) tcGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTgcgc < 1:71276/136‑1 (MQ=255) gCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCCGTGGCCGACCAGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCAc > 1:320116/1‑150 (MQ=255) ctactaCCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCACTTGcgcggtgggg > 2:494065/1‑120 (MQ=255) ctactaCCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCACTTGcgcggtgggg < 1:494065/126‑7 (MQ=255) ctctCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGt > 2:68763/1‑150 (MQ=255) ccGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTc > 1:410299/1‑150 (MQ=255) ccGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAAACAGTCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTc > 1:436616/1‑150 (MQ=255) tGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGc < 2:151762/150‑1 (MQ=255) ccTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACATCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCgg < 2:545496/150‑1 (MQ=255) gcCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTa > 1:584119/1‑150 (MQ=255) gcCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTa > 1:384063/1‑150 (MQ=255) ccGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATc > 2:59115/1‑150 (MQ=255) cGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATcc > 2:532949/1‑150 (MQ=255) ttGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTc < 1:81818/150‑1 (MQ=255) cgcTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCCGCCGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCgcgc > 2:545897/1‑150 (MQ=255) tCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCAc > 1:27357/1‑150 (MQ=255) aTGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTGAGCGGCCGTATCCTCGCGCCACGc > 1:473243/1‑150 (MQ=255) ggCCTTGCTGAGCCTGTCCCTGGCCAGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCACCTGCAGCCACTGGCCATCAGCAGTGAGCTCAGCGGCCGTATCCTCGCGCCACGCAc < 1:569627/150‑1 (MQ=255) cTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCAccgc > 2:586559/1‑150 (MQ=255) ttGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAgccagacgaaccggctcagcaaggccatgagcgccaacgggagcaggcacggggagagggtagtaggcatgcggatcttccgatgatgaccgtgtatatgctaaggcag < 1:221614‑M2/150‑110 (MQ=255) tGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAg < 1:586559/150‑1 (MQ=255) gAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAgt < 1:545897/150‑1 (MQ=255) ccTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggtagtaggcatgcggatcttccgatgatgaccgtgtatatgctaaggcagacgctgcctg < 2:306523‑M2/150‑118 (MQ=255) gTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAgtgcgtgc < 2:410299/150‑1 (MQ=255) ccTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggta < 2:323154‑M2/87‑61 (MQ=255) ccTGGCCGGCTGCAGCGACAGCGCCGAgccagggacaggctcagcaaggccatgagcgccaacgggcgcaggcacggggagagggta > 1:323154‑M2/1‑27 (MQ=255) ccTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAg < 1:44906/82‑1 (MQ=255) ccTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAg > 2:44906/1‑82 (MQ=255) ccTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAACtgcgtgcgag > 2:191238/1‑148 (MQ=255) ccGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCg > 1:535420/1‑150 (MQ=255) aCAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCGCAGGCGTGGTGc > 2:359171/1‑150 (MQ=255) | CCCAGGCAGCGTCTGCCTTAGCATATACACGGTCATCATCGGAAGATCCGCATGCCTACTACCCTCTCCCCGTGCCTGCGCCCGTTGGCGCTCATGGCCTTGCTGAGCCTGTCCCTGGCCGGCTGCAGCGACAGCGCCGAGCCAGACGAACAGGCCCCCACCGCGCAAGTGCGCGTAGAAACCCTGCAACTGCAGCCACTGGCCATCAGCAGTGAACTCAGCGGCCGTATCCTCGCGCCACGCACCGCCGAAGTGCGTGCGCGGGTCGCAGGCGTGGTGC > NC_002947/3915025‑3915304 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |