New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4449631 | 32 (1.380) | 3 (0.130) | 3/242 | NT | 10.7% | intergenic (+102/‑340) | nicR/nicA | HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A |
? | NC_002947 | = 4449683 | 19 (0.850) | intergenic (+154/‑288) | nicR/nicA | HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A |
CTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4449542‑4449631 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTCCAACCACCGATGCGTGTCCAATGTGAGCGAGCTTGCTCGCGATGCGCTTGATCTCTCAGGC < NC_002947/4449683‑4449570 CTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTCCAACCAC < 2:487594/150‑1 TGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTC > 1:93026/1‑112 TGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTC < 2:93026/112‑1 GCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTCCAACCACCGATGCGTGTCCAATGTGAGCGAGCTTGCTCGCGATGCGCTTGATCTCTCAGGC < 1:40805/115‑1 GCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTCCAACCACCGATGCGTGTCCAATGTGAGCGAGCTTGCTCGCGATGCGCTTGATCTCTCAGGC > 2:40805/1‑115 CTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4449542‑4449631 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTCCAACCACCGATGCGTGTCCAATGTGAGCGAGCTTGCTCGCGATGCGCTTGATCTCTCAGGC < NC_002947/4449683‑4449570 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |