New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4449631	32 (1.380)	3 (0.130)	3/242	NT	10.7%	intergenic (+102/‑340)	nicR/nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
	?	NC_002947	= 4449683	19 (0.850)					intergenic (+154/‑288)	nicR/nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A

TGTTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCAT  >  NC_002947/4449534‑4449827                                                                                                                                                      |                                                                                                                                                 tgttgtGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTgg                                                                                                                                                  <  2:18483/150‑1 (MQ=255)      tgACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAAt                                                                                                                                             >  1:142483/1‑150 (MQ=255)            ccgccATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCAc                                                                                                                                       <  2:416202/150‑1 (MQ=255)                   tGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGa                                                                                                                                <  2:72410/150‑1 (MQ=255)                                     gCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGc                                                                                                                                                 >  2:40805‑M2/1‑114 (MQ=255)                                     gCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGc                                                                                                                                                 <  1:40805‑M2/115‑2 (MQ=255)                                        tGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCg                                                                                                           >  1:560770/1‑150 (MQ=255)                                              aTCAAGCGCATCGCGAGCAAGCTCGCCCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAAt                                                                                                                                             >  2:604622/1‑110 (MQ=255)                                              aTCAAGCGCATCGCGAGCAAGCTCGCCCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAAt                                                                                                                                             <  1:604622/110‑1 (MQ=255)                                                 aaGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCgg                                                                                                  >  1:450728/1‑150 (MQ=255)                                                            gAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCACTCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCt                                                                                       <  2:142483/150‑1 (MQ=255)                                                                      gctcACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCAACCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTacacaca                                                                             >  2:392298/1‑150 (MQ=255)                                                                               ggACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCgg                                                                    <  1:64707/150‑1 (MQ=255)                                                                               ggACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCgg                                                                    <  1:161672/150‑1 (MQ=255)                                                                                gACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCggg                                                                   <  2:10969/150‑1 (MQ=255)                                                                                gACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCggg                                                                   <  1:119473/150‑1 (MQ=255)                                                                                   acGCATCGGGGGTTGGACCCAGGCCACCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTCGTGGCCAAGCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATACGCGCGTAAACCCGCTCTTACACACACAAACTGAGGGGc                                                                >  2:466051/1‑150 (MQ=18)                                                                                       aTCGGTGGTTGGACACAGGCCGCCGTAGGAGTGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCgg                                                            <  2:188878/150‑1 (MQ=255)                                                                                          ggtggtTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                   >  1:331387/1‑124 (MQ=255)                                                                                          ggtggtTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                   <  2:331387/124‑1 (MQ=255)                                                                                           gtggtTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGccaaccaccgatgcgtgtccaatgtgagcgagcttgctcgcgatgcgcttgatctctcaggccgcgtatctgtgacggcaatggcggcag                                                        <  2:487594‑M2/150‑91 (MQ=255)                                                                                           gtggtTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGcaca                                                        >  2:239999/1‑150 (MQ=255)                                                                                                  gACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGccaaccaccgatgcgtgtccaatgtgagcgagcttgctcgcgatgcgcttgatctctca                                                                                       <  2:93026‑M2/112‑60 (MQ=255)                                                                                                  gACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGccaaccaccgatgcgtgtccaatgtgagcgagcttgctcgcgatgcgcttgatctctca                                                                                       >  1:93026‑M2/1‑53 (MQ=255)                                                                                                   acacAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATg                                                >  2:172878/1‑150 (MQ=255)                                                                                                                     gCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCgg                                                                    <  2:466391/112‑1 (MQ=255)                                                                                                                     gCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCgg                                                                    >  1:466391/1‑112 (MQ=255)                                                                                                                                          ccggccCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACaa         >  1:126638/1‑150 (MQ=255)                                                                                                                                                     ggCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCAt  <  2:139858/146‑1 (MQ=255)                                                                                                                                                     ggCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCAt  >  1:139858/1‑146 (MQ=255)                                                                                                                                                      |                                                                                                                                                 TGTTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCAT  >  NC_002947/4449534‑4449827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.