New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4593882 = | 38 (1.640) | 3 (0.160) | 3/202 | NT | 10.4% | intergenic (+142/+157) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
? | NC_002947 | 4593975 = | 21 (1.120) | intergenic (+235/+64) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
TTTTGAAAGGGTTTGAGTAGTGGCGGCAACGGTGAACGGCGGGTGGAAGTTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4594044‑4593882 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAA > NC_002947/4593975‑4594122 TTTTGAAAGGGTTTGATTAGTGGCGGCAACGGTGAACGGCGGGTGGAAGTTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGG < 1:518499/150‑1 TTTGAAAGGGTTTGAGTAGTGGCGGCAACGGTGAACGGCGGGTGGAAGTTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGG < 1:522024/150‑1 AAAGGGTTTGAGTAGTGGCGGCAACGGTGAACGGCGGGTGGAAGTTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTA > 1:510359/1‑150 AAGGGTTTGAGTAGTGGCGGCAACGGTGAACGGCGGGTGGAAGTTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTAC > 2:408173/1‑150 GTTTGAGTAGTGGCGGCAACGGTGAACGGCGGGTGGAAGTTGGCCAGCNGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCGAATCACCAACATGTGTTCACCCCCGATCGGCTGTAGGAGCGGGGTTTCCCGC > 1:454492/1‑150 CCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAA > 2:568387/1‑150 CCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGG > 1:184988/1‑68 CCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGG < 2:184988/68‑1 CGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAA > 1:358794/1‑150 GCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGAC < 2:358794/150‑1 GAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGAACAACCCCAGAAATACACGACGCTCGCCGTACAACAGCTCC > 2:439779/1‑150 GCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGG < 1:439779/150‑1 GCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGG < 1:433901/150‑1 TTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGT < 1:609912/150‑1 TACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTA < 2:422248/150‑1 GCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCC < 2:389993/118‑1 GCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCC > 1:389993/1‑118 AAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAA < 2:522024/150‑1 TTTTGAAAGGGTTTGAGTAGTGGCGGCAACGGTGAACGGCGGGTGGAAGTTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACGCGGCCTGCGCCTAATCACCAACATGTGTCCACCCCCGATCGGATGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4594044‑4593882 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAA > NC_002947/4593975‑4594122 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |