New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4593882 = | 38 (1.640) | 3 (0.160) | 3/202 | NT | 10.4% | intergenic (+142/+157) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
? | NC_002947 | 4593975 = | 21 (1.120) | intergenic (+235/+64) | mccA/PP_4068 | methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator |
GGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAA > NC_002947/4593831‑4594122 | ggccTGCTAGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGggcc < 2:477713/150‑1 (MQ=255) tgctgGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGggccggcc > 2:510359/1‑150 (MQ=255) tgctgGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGggccggcc > 2:236642/1‑150 (MQ=255) ctgGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCct < 1:432541/150‑1 (MQ=255) tgGCCAATCTCTACCCGTCGCCCACCCTTGCCGCCGCTACCGAACTCGCCGGTAAACCCGCTCCTACATCCGATCGGCGGCGCACACATGTCGGTGACTAGGCACACGCCGCCCGCAGGAGCGGCTTGACCCGCGAACGGGCCGGccccg > 2:38958/1‑148 (MQ=255) gCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCctgct > 1:606454/1‑150 (MQ=255) tctACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCacc < 1:426877/150‑3 (MQ=255) tctACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAAc < 1:236642/150‑1 (MQ=255) ccccGGCGCTCACCGTTGCAGCCACTACCGTGTTCGCGAGTATACGCGCTCCTACCTCCGAGCGGGGGTGGACGCATGTTGGGGACTAGGCGCAGGCCGCGGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTc < 2:397503/149‑1 (MQ=21) ccGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCa < 2:606454/150‑1 (MQ=255) ccGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCa < 1:154892/150‑1 (MQ=255) ccGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCa > 1:422248/1‑150 (MQ=255) gTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCCGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGCGTTTACCCGCGAAAGGGCCGGCCCTGCTGCCCAACTTCCAcc > 1:28468/1‑150 (MQ=255) aCCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGtt > 1:438573/1‑150 (MQ=255) cGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCa < 1:517955/150‑1 (MQ=255) gcTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTgccgc < 1:31828/150‑1 (MQ=255) gTATCCGCGGGCAAAACCCCTCCTACATCCGTTCGGGGGTGGACAAATGTTGGTGATTCAGCTCTGTTCGCTTGTCGCAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCTCCCGCCGTTCACCGTTGCCGCCactac < 1:380766/150‑1 (MQ=18) GCGGGAAACCCCGCTCCTACAGCCGATCGGGGGTGAACACATGTTGGTGATTCGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCNGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAAc > 1:454492‑M1/1‑150 (MQ=255) GTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCtt > 2:408173‑M1/1‑150 (MQ=255) TAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCttt > 1:510359‑M1/1‑150 (MQ=255) CCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCaaa < 1:522024‑M1/150‑1 (MQ=255) ccgctcctacacgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCaaaa > 2:568387‑M2/81‑150 (MQ=255) CCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTAATCAAACCCTTTCaaaa < 1:518499‑M1/150‑1 (MQ=255) cgctcctacacgcggcctgcgcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCaaaaa > 1:358794‑M2/80‑150 (MQ=255) tCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCa > 2:54657/1‑150 (MQ=255) gggTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCAt > 2:27544/1‑138 (MQ=255) gggTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCAt < 1:27544/138‑1 (MQ=255) gcctaatcaccaacatgtgtccacccccgatcggatgtaggagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGac < 2:358794‑M2/91‑1 (MQ=255) gTGGACACATGTTGGTGATTAGGCGAAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGacc > 2:433901/1‑150 (MQ=255) gagcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGAACAACCCCAGAAATACACGACGCTCGCCGTACAACAGCTcc > 2:439779‑M2/20‑150 (MQ=255) gcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCgg < 1:433901‑M2/133‑1 (MQ=255) gcgggtttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCgg < 1:439779‑M2/133‑1 (MQ=255) tttacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGt < 1:609912‑M2/138‑1 (MQ=255) tacccgcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTa < 2:422248‑M2/140‑1 (MQ=255) gcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAccc > 1:389993‑M2/6‑118 (MQ=255) gcgaaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAAccc < 2:389993‑M2/113‑1 (MQ=255) aaAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCaa < 2:522024‑M2/148‑1 (MQ=255) | GGCCTGCTGGCCAATCTCTACCCGTCGCTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACATCCGATCGGGGGTGGACACATGTTGGTGATTAGGCGCAGGCCGCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAACTTCCACCCGCCGTTCACCGTTGCCGCCACTACTCAAACCCTTTCAAAAAGCCCCATGCACCCGCACGACCACCCCAAGAAATTCGCAACCCTCTTCGCACAACAGCGCCGGGTAGTTACTGTTCAA > NC_002947/4593831‑4594122 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |