New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5647180 = | 31 (1.340) | 3 (0.140) | 3/238 | NT | 8.8% | coding (459/738 nt) | PP_4955 | hypothetical protein |
? | NC_002947 | 5647224 = | 33 (1.500) | coding (415/738 nt) | PP_4955 | hypothetical protein |
CGCCTATTCACCGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5647231‑5647180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGT > NC_002947/5647224‑5647370 cgaCTATTCACCGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATA < 1:67708/147‑1 CTATTCACCGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGA > 1:441664/1‑150 CGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAG < 2:441664/150‑1 gtTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGCAGAATTGCCCGATATTGGCGCGCGAG < 1:295873/148‑1 GTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGT > 1:439176/1‑150 CGCCTATTCACCGGAATTCGACGGGGATCCCCGTCTGCACAAAGTGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5647231‑5647180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGATTACTCAGGTAGGCGCTGGAGAATTGCCCGATATTGGCGCGCGAGT > NC_002947/5647224‑5647370 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |