New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5647180 =	31 (1.340)	3 (0.140)	3/238	NT	8.8%	coding (459/738 nt)	PP_4955	hypothetical protein
	?	NC_002947	5647224 =	33 (1.500)					coding (415/738 nt)	PP_4955	hypothetical protein

TCTCCCCCAGCGGCGGATCCACCAGCATCACCCCATCACGCACGTCCTGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGA  >  NC_002947/5647032‑5647324                                                                                                                                                     |                                                                                                                                                 tctcCCCCAGCGGCGGATCCACCAGCATCACCCCATCACGCACGTCCTGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCa                                                                                                                                                 >  1:611437/1‑150 (MQ=255)  actcgcgcgccaatatcgggcaattctccagcgcctacctgagtaatcgtattcgcctgctgcagcgtaagggcgaggcgtttagctacaagcgtctgtctgacctttatgcctatagcattgccgtagtgcgtgattacgcctattCAc                                                                                                                                                >  1:439176‑M1/148‑150 (MQ=255)   ctcgcgcgccaatatcgggcaattctgcagcgcctacctgagtaatcgtattcgcctgctgcagcgtaagggcgaggcgtttagctacaagcgtctgtctgacctttatgcctatagcattgccgtagtgcgtgattacgcctattcaac                                                                                                                                               <  1:295873‑M1/4‑3 (MQ=255)                               ccccATCACGCACGTCCTGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGt                                                                                                                   <  2:538983/150‑1 (MQ=255)                                cccATCACGCACGTCCTGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTc                                                                                                                  >  2:432600/1‑150 (MQ=255)                                   aTCACGCACGTCCTGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGaa                                                                                                               >  2:285032/1‑150 (MQ=255)                                        ctgagtaatcgtattcgcctgctgcagcgtaagggcgaggcgtttagctacaagcgtctgtctgacctttatgcctatagcattgccgtagtgcgtgattacgcctattCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCg                                                                                                          <  2:441664‑M1/41‑1 (MQ=255)                                                tcgtattcgcctgctgcagcgtaagggcgaggcgtttagctacaagcgtctgtctgacctttatgcctatagcattgccgtagtgcgtgattacgcctattCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAg                                                                                                  >  1:441664‑M1/102‑150 (MQ=255)                                                tGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAg                                                                                                  <  1:285032/150‑1 (MQ=255)                                                  cGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGc                                                                                                <  1:287690/150‑1 (MQ=255)                                                   tattcgcctgctgcagcgtaagggcgaggcgtttagctacaagcgtctgtctgacctttatgcctatagcattgccgtagtgcgtgattacgcctattCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAatagtcg                                                                                               <  1:67708‑M1/52‑4 (MQ=255)                                                                            ccgatctcTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGACTAGTCGTAATCACGCACTACGGCAATGCtat                                                                      <  1:173820/143‑1 (MQ=255)                                                                              aCGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAg                                                                    <  1:185541/150‑1 (MQ=255)                                                                                  aCTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCAt                                                                <  2:611437/150‑1 (MQ=255)                                                                                    tCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGCATGCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCtataagatcgg                                                              >  2:173820/1‑143 (MQ=255)                                                                                    tCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATaa                                                              >  1:459783/1‑150 (MQ=255)                                                                                    tCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATaa                                                              >  2:353884/1‑150 (MQ=255)                                                                                    tCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATaa                                                              >  2:200749/1‑150 (MQ=255)                                                                                      gTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACgg                                                                               >  1:470685/1‑131 (MQ=255)                                                                                      gTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACgg                                                                               <  2:470685/131‑1 (MQ=255)                                                                                         ttCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAGAATTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTTAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTc                                                         >  1:324302/1‑150 (MQ=255)                                                                                          tCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTca                                                        <  1:353884/150‑1 (MQ=255)                                                                                          tCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTca                                                        <  1:384851/150‑1 (MQ=255)                                                                                            cACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTcaga                                                      >  2:612812/1‑150 (MQ=255)                                                                                                 cgaGGCGTACCCTCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCagacagac                                                 >  2:486396/3‑150 (MQ=255)                                                                                                 ccAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGc                                                                                                >  2:337703/1‑103 (MQ=255)                                                                                                 ccAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGc                                                                                                <  1:337703/103‑1 (MQ=255)                                                                                                     gCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAg                                                            <  1:512844/135‑1 (MQ=255)                                                                                                     gCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAg                                                            >  2:512844/1‑135 (MQ=255)                                                                                                     gCTTACCCGCCCTGCCGCCAACATGCGAACCGCAGAAGAAAGGTTGCGCACCGGCACTTTGTGCAGATGGGGATCCCCGTCGAATTCGGGTGCATAGGCGTAATAATGCACTGCGGCAAAGCCATAGGCAGCAAGGTCAGACAGACGCtt                                             >  2:248500/1‑150 (MQ=255)                                                                                                            cGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCtata                                                                     <  1:504521/119‑1 (MQ=255)                                                                                                            cGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCtata                                                                     >  2:504521/1‑119 (MQ=255)                                                                                                                    cgccAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGCTCCACATCAAAGTCCGGTAAATCAGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTc                              <  1:200749/150‑1 (MQ=255)                                                                                                                                        aagaaAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGc          <  1:612812/150‑1 (MQ=255)                                                                                                                                         agaaAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGAATCGACCTTACGCTGCAGCAGGCg         >  2:295873/1‑150 (MQ=255)                                                                                                                                          gaaAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTaaa                                    <  2:325506/122‑1 (MQ=255)                                                                                                                                          gaaAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTaaa                                    >  1:325506/1‑122 (MQ=255)                                                                                                                                                ttGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGa  <  1:486396/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TCTCCCCCAGCGGCGGATCCACCAGCATCACCCCATCACGCACGTCCTGCGGCTCACGCTGCAGGTTGTAGCGGGCCACGTACTCGTCTTCCACCGCCAGGCTTACCCGCCCTGCCGCCAACATGCGTACCGCAGAAGAAAAGTTGCGCACCGGCACTTTGTGCAGACGGGGATCCCCGTCGAATTCCGGTGAATAGGCGTAATCACGCACTACGGCAATGCTATAGGCATAAAGGTCAGACAGACGCTTGTAGCTAAACGCCTCGCCCTTACGCTGCAGCAGGCGAATACGA  >  NC_002947/5647032‑5647324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.