New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5754794	29 (1.250)	4 (0.180)	4/242	NT	11.9%	coding (934/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
	?	NC_002947	= 5754830	31 (1.390)					coding (970/1086 nt)	glnL	two‑component system sensor histidine kinase/phosphatase GlnL/GlnG

GCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5754643‑5754794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGG  <  NC_002947/5754830‑5754685                                                                                                                                                                                                                                                                                                            GCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCAT                                                                                                                                                      >  1:576583/1‑150   TGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG                                                                                                                                                    <  2:576583/150‑1   TGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG                                                                                                                                                    >  2:59290/1‑150                  TCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCAGGCCCAGCCCGG                                                                                                                                     >  2:83516/1‑150                                          GCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCAGGCCCAGCCAGGTACCGTCCGGGCGGCCACTGACCA                                                                                                             >  2:285303/1‑150                                             AGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGG                                                                                                          <  1:83516/150‑1                                                 CACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGCCAGGCCCAGCCAGGTACCGTCCGGGCGGCCACTGACCATGGGATA                                                                                                      <  1:285303/150‑1                                                                                                                                                     ATGGCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGG  >  1:191702/1‑150                                                                                                                                                                                                                                                                                                            GCTGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5754643‑5754794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggCCAGGCCCAGCCCGGTACCGTCCGGGCGGCCACTGACCATGGGATAGAAGAGGGTTTCCTGCAGTTCCGGCGGGATGCCTGGGCCGTTGTCGATGATCTCTACCCGCGCTACCAGGCGGTGACGCACGTGGCCGATGGTGAACTGG  <  NC_002947/5754830‑5754685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.