| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5754794 | 29 (1.250) | 4 (0.180) | 4/242 | NT | 11.9% | coding (934/1086 nt) | glnL | two‑component system sensor histidine kinase/phosphatase GlnL/GlnG |
| ? | NC_002947 | = 5754830 | 31 (1.390) | coding (970/1086 nt) | glnL | two‑component system sensor histidine kinase/phosphatase GlnL/GlnG | |||||
TGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCT > NC_002947/5754645‑5754941 | tGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG > 2:59290‑M1/1‑150 (MQ=255)tGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGG < 2:576583‑M1/150‑1 (MQ=255) gTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCAATGGAAAGTGgcc > 2:191702/1‑150 (MQ=255) cATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGccc < 1:316616/150‑1 (MQ=255) tCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGccaggcccagcccgg > 2:83516‑M1/1‑135 (MQ=255) gcCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGccaggcccagccaggtaccgtccgggcggccactgacca > 2:285303‑M1/1‑111 (MQ=255) ccAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGccat > 1:191702‑M2/1‑146 (MQ=255) aGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGccaggcccagcccggtaccgtccgggcggccactgaccatgg < 1:83516‑M1/150‑43 (MQ=255) cACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGccaggcccagccaggtaccgtccgggcggccactgaccatgggata < 1:285303‑M1/150‑47 (MQ=255) aCCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCATGGCAAATACCCAg > 2:506110/1‑150 (MQ=255) ggCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAAcatc < 1:567402/150‑1 (MQ=255) gTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCa < 2:520128/133‑1 (MQ=255) gTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCa < 2:520485/133‑1 (MQ=255) gTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCa > 1:520128/1‑133 (MQ=255) gTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCa > 1:520485/1‑133 (MQ=255) cGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAg > 2:71372/1‑150 (MQ=255) gCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCC‑GACGCGGACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAgg < 1:506110/150‑1 (MQ=255) cTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTAcc > 2:519540/1‑123 (MQ=255) cTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTAcc < 1:519540/123‑1 (MQ=255) gcgcGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATc < 2:228826/150‑1 (MQ=255) agaTCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCACGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGaaa < 1:42140/150‑1 (MQ=255) cAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTgg < 1:71372/150‑1 (MQ=255) cccAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAAcatca > 2:290954/1‑101 (MQ=255) cccAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAAcatca < 1:290954/101‑1 (MQ=255) cccAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAAGATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATAc > 2:49878/1‑150 (MQ=255) ccAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATa < 1:488669/148‑1 (MQ=255) ccAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATa > 2:488669/1‑148 (MQ=255) ccgccgGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCg > 1:274253/1‑150 (MQ=255) ccgccgGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCg > 1:33060/1‑150 (MQ=255) aGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCctc < 1:71691/150‑1 (MQ=255) gAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTTGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTg > 1:99026/1‑150 (MQ=255) ccTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATcagc > 1:195872/1‑76 (MQ=255) ccTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATcagc < 2:195872/76‑1 (MQ=255) ccTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACa > 1:275371/1‑150 (MQ=255) tATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCTGGCTGGGCCTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtg < 1:285303‑M2/150‑105 (MQ=255) cccATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTgg > 2:268641/1‑104 (MQ=255) cccATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTgg < 1:268641/104‑1 (MQ=255) ccATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtgaact < 1:83516‑M2/150‑109 (MQ=255) aTGGccaggcccagcccggtaccgtccgggcggccactgaccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtgaactgg > 1:191702‑M1/1‑4 (MQ=255) tGGTCAGTGGCCGCCCGGACG‑GTACCTGGCTGGGCCTGGccatgggatagaagagggtttcctgcagttccggcgggatgcctgggccgttgtcgatgatctctacccgcgctaccaggcggtgacgcacgtggccgatggtgaactggc > 2:285303‑M2/1‑39 (MQ=255) | TGCGCCTGGGTCGCATCACCTTGCGCAGCCGCGCCCTGCGCCAGTTCACCATCGGCCACGTGCGTCACCGCCTGGTAGCGCGGGTAGAGATCATCGACAACGGCCCAGGCATCCCGCCGGAACTGCAGGAAACCCTCTTCTATCCCATGGTCAGTGGCCGCCCGGACG‑GTACCGGGCTGGGCCTGGCCATTACCCAGAACATCATCAGCCAGCACCAGGGCCTGATCGAGTGTGAAAGCCACGCTGGCCATACCGCCTTCTCGATTTACCTGCCTCTGGAACAAGGAGCCACCGCCT > NC_002947/5754645‑5754941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |