New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 80738826 (1.120)3 (0.130) 3/242 NT 10.5% coding (649/708 nt) PP_0694 hypothetical protein
?NC_002947 = 807416 26 (1.160)coding (621/708 nt) PP_0694 hypothetical protein

TACCGACAGCGGGTGCTCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/807237‑807388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctCGACCTCACGCCTTTCCAGGGCGAGGAAAGCGAAGAG  <  NC_002947/807416‑807380
                                                                                                                                                                                             
TACCGACAGCGGGTGCTCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCG                                         <  2:588107/150‑1
   CGACAGCGGGTGCTCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTC                                          <  1:490674/146‑1
   CGACAGCGGGTGCTCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTC                                          >  2:490674/1‑146
                                       GTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTCGACCTCACGCCTTTCCAGGGCGAGGAAAGCGAAGAG  <  2:155073/150‑1
                                              GCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTCGACCTCACGCCTTTCCAGGGCGAGGAAAGCGAAGA   >  1:104548/1‑142
                                              GCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTCGACCTCACGCCTTTCCAGGGCGAGGAAAGCGAAGA   <  2:104548/142‑1
                                                                                                                                                                                             
TACCGACAGCGGGTGCTCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/807237‑807388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctCGACCTCACGCCTTTCCAGGGCGAGGAAAGCGAAGAG  <  NC_002947/807416‑807380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.