New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 807388	26 (1.120)	3 (0.130)	3/242	NT	10.5%	coding (649/708 nt)	PP_0694	hypothetical protein
	?	NC_002947	= 807416	26 (1.160)					coding (621/708 nt)	PP_0694	hypothetical protein

GCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGCACACATCGAGGAAGCGGTGC  >  NC_002947/807267‑807557                                                                                                                                                      |                                                                                                                                              gCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCg                                                                                                                                               >  1:9237/1‑150 (MQ=255)         tGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGgtc                                                                                                                                       >  1:92935/1‑150 (MQ=255)           tAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGgtcgt                                                                                                                                     <  1:297461/150‑1 (MQ=255)                 gcggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCgg                                                                                                                                          <  2:410000/139‑1 (MQ=255)                 gcggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCgg                                                                                                                                          >  1:410000/1‑139 (MQ=255)                   ggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACgg                                                                                                                             <  2:573347/150‑1 (MQ=255)                   ggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACgg                                                                                                                             >  2:454399/1‑150 (MQ=255)                                 tgacgcggcgGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGgc                                                                                                               >  2:340942/5‑150 (MQ=255)                                        gcggATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTttct                                                                                                        <  1:85441/150‑1 (MQ=255)                                                        tCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTCCCg                                                                                        <  2:9237/150‑1 (MQ=255)                                                               tCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTttc                                                                                                         <  1:223057/126‑1 (MQ=255)                                                               tCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTttc                                                                                                         >  2:223057/1‑126 (MQ=255)                                                                       cAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTcggcagcggca                                                                         <  1:454399/150‑1 (MQ=255)                                                                          tctcCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAggg                                                                      >  2:169903/1‑150 (MQ=255)                                                                             ccTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGgcgc                                                                   >  2:405371/1‑150 (MQ=255)                                                                                       ttCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGt                                                         >  1:393258/1‑150 (MQ=255)                                                                                       ttCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGt                                                         >  2:10130/1‑150 (MQ=255)                                                                                                  cccGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGt                                              >  2:386582/1‑150 (MQ=255)                                                                                                      ggCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGgcgc                                                                                                             <  1:565859/83‑1 (MQ=255)                                                                                                      ggCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGgcgc                                                                                                             >  2:565859/1‑83 (MQ=255)                                                                                                                  ctctTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGagcgaagaggacgccctggcccgggccatccgcgaagagcaacaggagattgacgcatgagccaggaacgctacggcatccgccgcttcgcattgctcaacaccgccggctac                              <  2:155073‑M2/150‑114 (MQ=255)                                                                                                                  ctctTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTAc                              <  1:340942/150‑1 (MQ=255)                                                                                                                   tctTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGagcgaagaggacgccctggcccgggccatccgcgaagagcaacaggagattgacgcatgagccaggaacgctacggcatccgccgcttcgcattgctcaacaccgc                                     >  1:104548‑M2/1‑36 (MQ=255)                                                                                                                   tctTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGagcgaagaggacgccctggcccgggccatccgcgaagagcaacaggagattgacgcatgagccaggaacgctacggcatccgccgcttcgcattgctcaacaccgc                                     <  2:104548‑M2/142‑107 (MQ=255)                                                                                                                     ttCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCTTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGGGCAGGGTGGCGGCCAGGTCGCGGGCCTGCTGTACCga                           >  1:21144/1‑150 (MQ=255)                                                                                                                       cGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCgaga                         <  2:228513/150‑1 (MQ=255)                                                                                                                           ttCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGca                     <  1:405371/150‑1 (MQ=255)                                                                                                                                    cTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGCACACATCGAg            >  1:81375/1‑150 (MQ=255)                                                                                                                                    cTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGCACACATCGAg            <  1:421609/150‑1 (MQ=255)                                                                                                                                    cTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGCACACATCGAg            >  2:421609/1‑150 (MQ=255)                                                                                                                                     tGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGCACACATCGAgg           <  1:386582/150‑1 (MQ=255)                                                                                                                                           ggCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGCACACATCGAGGAAGCgg     <  2:92935/150‑1 (MQ=255)                                                                                                                                              gTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGCACACATCGAGGAAGCGGTGc  <  1:10130/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                              GCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATGCGTCAATCTCCTGTTGCTCTTCGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGAGGCACACATCGAGGAAGCGGTGC  >  NC_002947/807267‑807557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.