New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	976546 =	17 (0.740)	3 (0.140)	3/238	NT	14.6%	coding (254/756 nt)	trmJ	tRNA (cytosine(32)/uridine(32)‑2'‑O)‑methyltransferase TrmJ
	?	NC_002947	976581 =	19 (0.860)					coding (289/756 nt)	trmJ	tRNA (cytosine(32)/uridine(32)‑2'‑O)‑methyltransferase TrmJ

CACCGCATTCACGCGGGCCGATCAACGGCCAGGGAATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/976584‑976546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatgcGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTCCAACCCCGACTTCAGCTCGCTGAACCT  >  NC_002947/976581‑976729                                                                                                                                                                                              CACCGCATTCACGCGGGCCGATCAACGGCCAGGGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGC                                                                                           >  1:178782/1‑99 CACCGCATTCACGCGGGCCGATCAACGGCCAGGGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGC                                                                                           <  2:178782/99‑1    CGCATTCACGCGGGCCGATCAACGGCCAGGGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGTGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCAC                                     >  2:20591/1‑150                                       CGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTCCAACCCCGACTTCAGCGAGCTGAAgtc  <  2:161198/150‑4                                                                                                                                                                                              CACCGCATTCACGCGGGCCGATCAACGGCCAGGGAATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/976584‑976546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatgcGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTCCAACCCCGACTTCAGCTCGCTGAACCT  >  NC_002947/976581‑976729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.