| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 976546 = | 17 (0.740) | 3 (0.140) | 3/238 | NT | 14.6% | coding (254/756 nt) | trmJ | tRNA (cytosine(32)/uridine(32)‑2'‑O)‑methyltransferase TrmJ |
| ? | NC_002947 | 976581 = | 19 (0.860) | coding (289/756 nt) | trmJ | tRNA (cytosine(32)/uridine(32)‑2'‑O)‑methyltransferase TrmJ | |||||
GTGCCCGTGCTTCGGGCGCCGACGATGTGCTGGATAACGCCCAGGTGGTCGACAGTCTCGAACAGGCGCTGGTCGGCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTCCAACCCCGACTTCAGCTCGCTGAACCT > NC_002947/976432‑976729 | gtgcacgtggaaatgacatcgctgcagttcttcgttggtcaggccggcgtgctcgcgcacgaacaccagggcgatttcctcgccgccattggcatgctccaccgccttggcaccGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCg > 2:20591‑M1/115‑150 (MQ=255) cgcCGACGATGTGCTGGATAACGCCCAGGTGGTCGACAGTCTCGAACAGGCGCTGGTCGGCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGa < 1:556974/150‑1 (MQ=255) cgacgaTGTGCTGGATAACGCCCAGGTGGTCGACAGTCTCGAACAGGCGCTGGTCGGCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCa < 2:96154/150‑1 (MQ=255) cgacgaTGTGCTGGATAACGCCCAGGTGGTCGACAGTCTCGAACAGGCGCTGGTCGGCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCa < 1:434865/150‑1 (MQ=255) gCCCAGGTGGTCGACAGTCTCGAACAGGCGCTGGTCGGCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGaa > 2:162306/1‑150 (MQ=255) tCGACAGTCTCGAACAGGCGCTGGTCGGCTGTAAACTCGACGCCAGCCACAGAGATCGCGAGCGCAGCATCCGCGGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTgg > 1:168727/1‑150 (MQ=255) gcgcccgaacaccagggcgatttcctcgccgccattggcatgctccaccgccttggcaccGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTg > 1:178782‑M1/61‑99 (MQ=255) gcgcccgaacaccagggcgatttcctcgccgccattggcatgctccaccgccttggcaccGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTg < 2:178782‑M1/39‑1 (MQ=255) cGAACAGGCGCTGGTCGGCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAg < 1:339732/127‑1 (MQ=255) cGAACAGGCGCTGGTCGGCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAg > 2:339732/1‑127 (MQ=255) gCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGa < 1:162306/150‑1 (MQ=255) tGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGAc > 1:600904/1‑149 (MQ=255) tGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGAc < 2:600904/149‑1 (MQ=255) aTGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCgg < 1:523043/116‑1 (MQ=255) aTGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCgg > 2:523043/1‑116 (MQ=255) ccAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGAt < 2:168727/150‑1 (MQ=255) caccgcattcacgcgggccgatcaacggccagggaatgcGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGgcgc < 2:178782‑M2/60‑1 (MQ=255) caccgcattcacgcgggccgatcaacggccagggaatgcGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGgcgc > 1:178782‑M2/40‑99 (MQ=255) gcagcaTTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGccc < 1:580719/84‑1 (MQ=255) gcagcaTTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGccc > 2:580719/1‑84 (MQ=255) cgcattcacgcgggccgatcaacggccagggaatgcGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGTGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGcac > 2:20591‑M2/37‑150 (MQ=255) agcaTTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGcac > 1:161198/1‑150 (MQ=255) cTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCACCAGCTTCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTc < 1:163474/150‑1 (MQ=255) cTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTc > 2:352933/1‑150 (MQ=255) tGGCCGTTGATCGGCCCGCGCGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTcc > 2:423467/1‑150 (MQ=255) cgcgTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTCCAACCCCGACTTCAGCt > 2:559228/1‑150 (MQ=255) cGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTCCAACCCCGACTTCAGCGAGctgaagtc < 2:161198‑M2/149‑4 (MQ=255) | GTGCCCGTGCTTCGGGCGCCGACGATGTGCTGGATAACGCCCAGGTGGTCGACAGTCTCGAACAGGCGCTGGTCGGCTGTAACCTGGTGATGGGCACCAGCGCCCGCGAGCGCAGCATTCCCTGGCCGTTGATCGGCCCGCGTGAATGCGGTGCCAAGGCGGTGGAGCATGCCAATGGCGGCGAGGAAATCGCCCTGGTGTTCGGGCGCGAGCACGCCGGCCTGACCAACGAAGAACTGCAGCGATGTCATTTCCACGTGCACATTCCCTCCAACCCCGACTTCAGCTCGCTGAACCT > NC_002947/976432‑976729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |