New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1203075 =	58 (2.510)	3 (0.140)	3/232	NT	5.5%	coding (898/1089 nt)	xcpY	type II secretion pathway protein XcpY
	?	NC_002947	1203123 =	49 (2.280)					coding (946/1089 nt)	xcpY	type II secretion pathway protein XcpY

TCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCGCACTGCCCTCGCCCTCCAGGCGCAGGTGCCAACGCTGACCATCGAAGCGCACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1203229‑1203075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGG  >  NC_002947/1203123‑1203252                                                                                                                                                                                                                                                                                               TCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCGCACTGCCCTCGCCCTCCAGGCGCAGGTGCCAACGCTGACCATCGAAGCGCACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGC                                                                                                                                         >  2:395474/1‑150     GAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCGCACTGCCCTCGCCCTCCAGGCGCAGGTGCCAACGCTGACCATCGAAGCGCACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGC                                                                                                                                     >  2:338398/1‑150                                                                                                          ACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGG                                >  2:484701/1‑150                                                                                                            CGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCG                                                         >  1:79142/1‑123                                                                                                            CGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCG                                                         <  2:79142/123‑1                                                                                                                                                   ctaCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAGGTGATCTTCGACCTGG  <  1:552782/136‑1                                                                                                                                                   ctaCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAGGTGATCTTCGACCTGG  >  2:552782/4‑139                                                                                                                                                       AAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGT                                     >  1:557305/1‑100                                                                                                                                                       AAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGT                                     <  2:557305/100‑1                                                                                                                                                                                                                                                                                               TCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCGCACTGCCCTCGCCCTCCAGGCGCAGGTGCCAACGCTGACCATCGAAGCGCACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1203229‑1203075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGG  >  NC_002947/1203123‑1203252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.