New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1203075 = | 58 (2.510) | 3 (0.140) | 3/232 | NT | 5.5% | coding (898/1089 nt) | xcpY | type II secretion pathway protein XcpY |
? | NC_002947 | 1203123 = | 49 (2.280) | coding (946/1089 nt) | xcpY | type II secretion pathway protein XcpY |
TCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCGCACTGCCCTCGCCCTCCAGGCGCAGGTGCCAACGCTGACCATCGAAGCGCACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1203229‑1203075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGG > NC_002947/1203123‑1203252 TCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCGCACTGCCCTCGCCCTCCAGGCGCAGGTGCCAACGCTGACCATCGAAGCGCACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGC > 2:395474/1‑150 GAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCGCACTGCCCTCGCCCTCCAGGCGCAGGTGCCAACGCTGACCATCGAAGCGCACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGC > 2:338398/1‑150 ACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGG > 2:484701/1‑150 CGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCG > 1:79142/1‑123 CGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCG < 2:79142/123‑1 ctaCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAGGTGATCTTCGACCTGG < 1:552782/136‑1 ctaCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAGGTGATCTTCGACCTGG > 2:552782/4‑139 AAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGT > 1:557305/1‑100 AAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGT < 2:557305/100‑1 TCTTGAACCTGCACTGTGGCGCCAGCGGCAGCCGCCATATCAGGCCATGGCGGCGCACTGCCCTCGCCCTCCAGGCGCAGGTGCCAACGCTGACCATCGAAGCGCACCGCTTGCAGGCGCAAGCCGGGGTTGTCACGCAGCCAGGTCTGCAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1203229‑1203075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGG > NC_002947/1203123‑1203252 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |