New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1203075 =	58 (2.510)	3 (0.140)	3/232	NT	5.5%	coding (898/1089 nt)	xcpY	type II secretion pathway protein XcpY
	?	NC_002947	1203123 =	49 (2.280)					coding (946/1089 nt)	xcpY	type II secretion pathway protein XcpY

GCAGGCCAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCC  >  NC_002947/1202975‑1203260                                                                                                                                                     |                                                                                                                                          cctgcactgtggcgccagcggcagccgccatatcaggccatggcggcgcactgccctcgccctccaggcgcaggtgccaacgctgaccatcgaagcgcacCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGt                                                                                                                                          >  2:484701‑M1/101‑150 (MQ=255)       cAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCtt                                                                                                                                    <  2:222304/150‑1 (MQ=255)        aGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGATAGCCCCGGCTTGCGCCTGCAAGCGGTGCGCTTc                                                                                                                                   >  2:606266/1‑150 (MQ=255)        aGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTc                                                                                                                                   >  1:85678/1‑150 (MQ=255)            cTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATg                                                                                                                               >  1:429439/1‑150 (MQ=255)                  aCGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGc                                                                                                                         >  2:381591/1‑150 (MQ=255)                    gcgGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGt                                                                                                                       <  1:416318/150‑1 (MQ=255)                       gCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTgg                                                                                                                    <  2:440385/150‑1 (MQ=255)                                cTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGTACCTgcgc                                                                                                           <  2:416757/150‑1 (MQ=255)                                 tCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGcc                                                                                                          >  1:404717/1‑150 (MQ=255)                                  cAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCt                                                                                                         >  1:515620/1‑150 (MQ=255)                                     gggcCTGTGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGga                                                                                                      <  2:338207/148‑1 (MQ=255)                                     gcgcCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGga                                                                                                      <  1:151524/150‑1 (MQ=255)                                      cgcCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGgag                                                                                                     <  1:272863/150‑1 (MQ=255)                                          tGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGgagggcg                                                                                                 >  2:595173/1‑150 (MQ=255)                                           gcgcGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGgagggcga                                                                                                >  2:193285/1‑150 (MQ=255)                                            cgcgAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGgagggcgag                                                                                               >  1:515057/1‑150 (MQ=255)                                              cgAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGgaaggcgagtg                                                                                             <  2:460643/150‑3 (MQ=255)                                                  agCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGgagggcga                                                                                                >  1:371396/1‑143 (MQ=255)                                                  agCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGgagggcga                                                                                                <  2:371396/143‑1 (MQ=255)                                                   gCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGt                                                                                                                       <  1:340992/119‑1 (MQ=255)                                                   gCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGt                                                                                                                       >  2:340992/1‑119 (MQ=255)                                                    cGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGCGGGCTGttc                                                                                       <  2:429439/150‑3 (MQ=255)                                                    cGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTgc                                                                                       <  2:144965/150‑1 (MQ=255)                                                        cTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGcgccg                                                                                   <  2:515620/150‑1 (MQ=255)                                                             gcagcaACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGcgcc                                                                                    <  2:256956/144‑1 (MQ=255)                                                             gcagcaACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGcgcc                                                                                    >  1:256956/1‑144 (MQ=255)                                                              cagcaACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATgg                                                                             <  1:193285/150‑1 (MQ=255)                                                                   aCTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGa                                                                        <  1:226813/150‑1 (MQ=255)                                                                        gTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATgg                                                                   >  1:395474/1‑150 (MQ=255)                                                                        gTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATgg                                                                   <  1:393639/150‑1 (MQ=255)                                                                                   cTAGACGACCTGCAGGCGCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCt                                                        >  2:316235/1‑150 (MQ=255)                                                                                      gacgacCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGTTCAGCGTTGGCAc                                                                                                                 >  1:139153/1‑90 (MQ=255)                                                                                      gacgacCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCAc                                                                                                                 <  2:139153/90‑1 (MQ=255)                                                                                       acgacCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGgcg                                                    >  2:578111/1‑150 (MQ=255)                                                                                            cTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCcaca                                               >  1:49351/1‑150 (MQ=255)                                                                                            cTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCcaca                                               >  1:479312/1‑150 (MQ=255)                                                                                                 ggCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCa                                          <  2:85678/150‑1 (MQ=255)                                                                                                 ggCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCa                                          <  1:130242/150‑1 (MQ=255)                                                                                                   accgcttgcaggcgcaagccggggttgtcacgcagccaggtctgcaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAgg                                        >  2:484701‑M2/51‑150 (MQ=255)                                                                                                     cgcttgcaggcgcaagccggggttgtcacgcagccaggtctgcaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATggcg                                                                 >  1:79142‑M2/49‑123 (MQ=255)                                                                                                     cgcttgcaggcgcaagccggggttgtcacgcagccaggtctgcaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATggcg                                                                 <  2:79142‑M2/75‑1 (MQ=255)                                                                                                      GCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTc                                     >  2:338398‑M1/1‑150 (MQ=255)                                                                                                          GCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGa                                 >  2:395474‑M1/1‑150 (MQ=255)                                                                                                                   gCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGt                        <  2:515057/150‑1 (MQ=255)                                                                                                                           aCAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCg                >  1:567573/1‑150 (MQ=255)                                                                                                                              aCCCCGGCGTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGAcc             >  2:400247/1‑150 (MQ=255)                                                                                                                               ccccGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCGGGCGCCACGGTGCAGGTTCAGTAGGGCCAAGGTGTCTTCGACCt            >  2:32575/1‑150 (MQ=255)                                                                                                                                cccGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTg           <  2:49351/150‑1 (MQ=255)                                                                                                                                 ccGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTgg          >  2:502211/1‑150 (MQ=255)                                                                                                                                 ccGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTgg          <  1:142134/150‑1 (MQ=255)                                                                                                                                 ccGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTgg          <  1:595173/150‑1 (MQ=255)                                                                                                                                  cGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAg                                         >  2:480126/1‑118 (MQ=255)                                                                                                                                  cGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAg                                         <  1:480126/118‑1 (MQ=255)                                                                                                                                   ggCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGAGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGa        <  1:340958/150‑1 (MQ=255)                                                                                                                                        gcgcCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGagcagc   <  1:502211/150‑1 (MQ=255)                                                                                                                                         cgcCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGcc  >  2:327339/1‑150 (MQ=255)                                                                                                                                            ctacaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAGGTGATCTTCGACCTgg          >  2:552782‑M2/10‑139 (MQ=255)                                                                                                                                            ctacaagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAGGTGATCTTCGACCTgg          <  1:552782‑M2/130‑1 (MQ=255)                                                                                                                                                aagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGt                                             <  2:557305‑M2/95‑1 (MQ=255)                                                                                                                                                aagcgGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGt                                             >  1:557305‑M2/6‑100 (MQ=255)                                                                                                                                                     |                                                                                                                                          GCAGGCCAGCCCTCGGCACGCGGCACAGGCCCTCAAGCGCCTGCGCGAGAGCGTACTGCAGCAGCAACTGCGTACACGTCAGCTAGACGACCTGCAGGCTCGCTTGCAGACCTGGCTGCGTGACAACCCCGGCTTGCGCCTGCAAGCGGTGCGCTTCGATGGTCAGCGTTGGCACCTGCGCCTGGAGGGCGAGGGCAGTGCGCCGCCATGGCCTGATATGGCGGCTGCCGCTGGCGCCACAGTGCAGGTTCAAGATGGCCAAGTGATCTTCGACCTGGGAGCAGCC  >  NC_002947/1202975‑1203260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.