New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3052758 =	23 (1.000)	4 (0.180)	4/234	NT	14.4%	coding (1415/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3052825 =	26 (1.200)					coding (1482/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator

GCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGAT  >  NC_002947/3052613‑3052902                                                                                                                                                  |                                                                                                                                                 gCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTg                                                                                                                                              <  2:342526/150‑1 (MQ=255)     tccgacagcgcagtcaccacacggcagccccaaccttccagcaaagtgcgcatgcccgcgcaaatcgccgcatcgttatccagcacccacaccctcgccccgcgcaagcgttcgaaaaaaggatcgcaaataacctggcccggtcgggtt                                                                                                                                          <  2:497467‑M1/9‑8 (MQ=255)           acCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCt                                                                                                                                    >  2:559847/1‑150 (MQ=255)                cAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGgtg                                                                                                                               <  1:559847/150‑1 (MQ=255)                 aaGACATGTTCATGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGgtgt                                                                                                                              <  1:127614/150‑1 (MQ=255)                                       cttccagcaaagtgcgcatgcccgcgcaaatcgccgcatcgttatccagcacccacaccctcgccccgcgcaagcgttcgagcatcggctcgcagataacctggctcGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAg                                                                                                        <  1:440671‑M1/43‑1 (MQ=255)                                              gATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGAGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACt                                                                                                 <  2:116783/150‑1 (MQ=255)                                                  tgCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCACGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTc                                                                                             >  1:200234/1‑150 (MQ=255)                                                     aGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCa                                                                                          >  1:68476/1‑150 (MQ=255)                                                              gcgcaaatcgccgcatcgttatccagcacccacaccctcgccccgcgcaagcgttcgagcatcggctcgcagataacctggctcGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGc                                                                                 >  2:440671‑M1/85‑150 (MQ=255)                                                                 aGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGACGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGca                                                                                                      >  1:65970/1‑126 (MQ=255)                                                                 aGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGca                                                                                                      <  2:65970/126‑1 (MQ=255)                                                                  ggACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAg                                                                             >  1:466443/1‑150 (MQ=255)                                                                     ccGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGcgg                                                                          >  2:285997/1‑148 (MQ=255)                                                                      cGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTGCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAg                                                                         >  1:55944/1‑150 (MQ=255)                                                                            cTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGtt                                                                                                                             >  1:252883/1‑92 (MQ=255)                                                                            cTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGtt                                                                                                                             <  2:252883/92‑1 (MQ=255)                                                                                 tCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGa                                                              >  1:269177/1‑150 (MQ=255)                                                                                                 cctcgccccgcgcaagcgttcgagcatcggctcgcagataacctggctcGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCaaa                                                                                        >  1:430797‑M1/50‑108 (MQ=255)                                                                                                 cctcgccccgcgcaagcgttcgagcatcggctcgcagataacctggctcGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCaaa                                                                                        <  2:430797‑M1/59‑1 (MQ=255)                                                                                                          aTCGCCGGCATCCTCGGCCACCGGATCCGCGTGTGTTCATGGCTGGGCAAAGGCTCGGTGTTc                                                                                                                            <  2:342466/63‑1 (MQ=255)                                                                                                          aTCGCCGGCATCCTCGGCCACCGGATCCGCGTGTGTTCATGGCTGGGCAAAGGCTCGGTGTTc                                                                                                                            >  1:342466/1‑63 (MQ=255)                                                                                                               cGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAg                                >  2:532903/1‑150 (MQ=255)                                                                                                                      cTCGGCCACCGGATCCGCGTGCGTTGATGGCTGTGCAAAGGCTCGGTGTTCGCTGTCGAGGGGCCGCTGAGCACCACTGCTCCCAAGGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTgg                         <  2:539790/150‑1 (MQ=255)                                                                                                                          gCCACCGGATTCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCACTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAATCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGc                     <  2:411165/150‑1 (MQ=255)                                                                                                                             aCCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAAc                                                <  2:311455/120‑1 (MQ=255)                                                                                                                             aCCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAAc                                                >  1:311455/1‑120 (MQ=255)                                                                                                                              ccGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGa                 >  1:302266/1‑150 (MQ=255)                                                                                                                                       cgtgcgtTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATgc        <  2:200234/150‑1 (MQ=255)                                                                                                                                             ttCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGATGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCGCGAACCATTGCGCGGGGCGAGGGTGGGGGTGCTGGATAACGATGCGGCGAt  >  1:497467/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCGGACCAGGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGAT  >  NC_002947/3052613‑3052902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.