New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3052758 =	23 (1.000)	4 (0.180)	4/234	NT	14.4%	coding (1415/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3052825 =	26 (1.200)					coding (1482/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator

GGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTGTGGTGACTGCGCTGTCGGA  >  NC_002947/3052678‑3052965                                                                                                                                                    |                                                                                                                                             ggACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAg                                                                                                                                            >  1:466443/1‑150 (MQ=255)    ccGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGcgg                                                                                                                                         >  2:285997/1‑148 (MQ=255)     cGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTGCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAg                                                                                                                                        >  1:55944/1‑150 (MQ=255)                tCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGa                                                                                                                             >  1:269177/1‑150 (MQ=255)                                              cGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAg                                                                                               >  2:532903/1‑150 (MQ=255)                                                     cTCGGCCACCGGATCCGCGTGCGTTGATGGCTGTGCAAAGGCTCGGTGTTCGCTGTCGAGGGGCCGCTGAGCACCACTGCTCCCAAGGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTgg                                                                                        <  2:539790/150‑1 (MQ=255)                                                         gCCACCGGATTCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCACTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAATCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGc                                                                                    <  2:411165/150‑1 (MQ=255)                                                            aCCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAAc                                                                                                               <  2:311455/120‑1 (MQ=255)                                                            aCCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAAc                                                                                                               >  1:311455/1‑120 (MQ=255)                                                             ccGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGa                                                                                >  1:302266/1‑150 (MQ=255)                                                                      cgtgcgtTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATgc                                                                       <  2:200234/150‑1 (MQ=255)                                                                            ttCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGATGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCGCGAACCATTGCGCGGGGCGAGGGTGGGGGTGCTGGATAACGATGCGGCGAt                                                                 >  1:497467/1‑150 (MQ=255)                                                                                  gctgggctttgggagcagtggtgctcagcggcacctcgacagcgaacaccgagcctttgcccagccGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTgcgc                                                           >  2:440671‑M2/67‑150 (MQ=255)                                                                                        CAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCAt                                                     >  2:187162‑M1/1‑150 (MQ=255)                                                                                         tttgggagcagtggtgctcagcggcacctcgacagcgaacaccgagcctttgcccagccGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAgg                                                                                              <  2:430797‑M2/49‑1 (MQ=255)                                                                                         tttgggagcagtggtgctcagcggcacctcgacagcgaacaccgagcctttgcccagccGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAgg                                                                                              >  1:430797‑M2/60‑108 (MQ=255)                                                                                              cTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCAc                                               <  2:302266/150‑1 (MQ=255)                                                                                                        gCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGaa                                     >  2:237114/1‑150 (MQ=255)                                                                                                         ctcagcggcacctcgacagcgaacaccgagcctttgcccagccGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAg                                    <  1:440671‑M2/107‑1 (MQ=255)                                                                                                             cGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTg                                <  2:466443/150‑1 (MQ=255)                                                                                                              gAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTgg                               <  1:237114/150‑1 (MQ=255)                                                                                                               aGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTggg                              <  2:68476/150‑1 (MQ=255)                                                                                                                ggTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCt                                         <  2:263743/138‑1 (MQ=255)                                                                                                                ggTGCCGCTGAGCACCACTGCTCCCAAAGCACAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCt                                         >  1:263743/1‑138 (MQ=255)                                                                                                                    ccGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGc                         >  2:392955/1‑150 (MQ=255)                                                                                                                          aGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGtgtg                   <  2:55944/150‑1 (MQ=255)                                                                                                                            caccacTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTgtggt                 <  1:532903/150‑1 (MQ=255)                                                                                                                             accacTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTgtggtg                >  2:188227/1‑150 (MQ=255)                                                                                                                              ccacTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTGTGGTGa               <  1:285997/150‑1 (MQ=255)                                                                                                                               cacTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGc                                                                                                                           <  2:449608/41‑1 (MQ=255)                                                                                                                               cacTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGc                                                                                                                           >  1:449608/1‑41 (MQ=255)                                                                                                                                  tGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTGTGGTGACTgc           <  2:269177/150‑1 (MQ=255)                                                                                                                                    cTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTGTGGTGACTgcgc         <  2:542800/150‑1 (MQ=255)                                                                                                                                       ccAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTGTGGTGACTGCGCTGt      >  1:380323/1‑150 (MQ=255)                                                                                                                                       ccAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTGTGGTGACTGCGCTGt      <  2:534509/150‑1 (MQ=255)                                                                                                                                           aacccgaccGGGCCAGGTTATTTGCGATCCTTTTTTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTGTGGTGACTGCGCTGTCgga  <  2:497467‑M2/141‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             GGACCGTGGGCTGGGTCTGGGCCTGGCAATCGTGGAGAAGATCGCCGGCATCCTCGGCCACCGGATCCGCGTGCGTTCATGGCTGGGCAAAGGCTCGGTGTTCGCTGTCGAGGTGCCGCTGAGCACCACTGCTCCCAAAGCCCAGCCGAGCCAGGTTATCTGCGAGCCGATGCTCGAACGCTTGCGCGGGGCGAGGGTGTGGGTGCTGGATAACGATGCGGCGATTTGCGCGGGCATGCGCACTTTGCTGGAAGGTTGGGGCTGCCGTGTGGTGACTGCGCTGTCGGA  >  NC_002947/3052678‑3052965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.