New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3368837 = | 15 (0.650) | 5 (0.230) | 5/240 | NT | 24.8% | coding (2100/3015 nt) | PP_2964 | transposase |
? | NC_002947 | 3368872 = | 16 (0.720) | coding (2135/3015 nt) | PP_2964 | transposase |
CGTCACCTCTCGCTGGAAAAACTGGACAAGGCTAACCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGT > NC_002947/3368688‑3368986 | cccttgggtatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcataccagatgcccggcgggatgaagagctggaacacggcgatgtagttgttggccacgtgccgataggccac > 1:600910‑M1/150‑150 (MQ=255) ccttgggtatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCg < 1:127323‑M1/2‑1 (MQ=255) cttgggtatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCgg > 2:277123‑M1/148‑150 (MQ=255) ttgggtatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGc < 1:591755‑M1/4‑1 (MQ=255) tatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCa < 1:90455‑M1/9‑1 (MQ=255) aaaaCTGGACAAGGCTAACCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTGCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTa > 2:591755/1‑150 (MQ=255) tcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccac > 2:271330‑M1/125‑125 (MQ=255) tcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccac < 1:271330‑M1/1‑1 (MQ=255) aCCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCg < 1:184688/150‑1 (MQ=255) ccGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt < 1:235923/150‑1 (MQ=255) ctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTgg > 2:90455‑M1/113‑150 (MQ=255) gcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTg < 1:187827‑M1/37‑1 (MQ=255) gcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTg > 2:187827‑M1/97‑133 (MQ=255) ctACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGc > 1:273342/1‑150 (MQ=255) cTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTAc > 2:238544/1‑150 (MQ=255) cAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGtt > 1:549118/1‑150 (MQ=255) cAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGAATACTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGtt > 2:69663/1‑150 (MQ=255) cctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt > 1:410879‑M1/73‑108 (MQ=255) cctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt < 2:410879‑M1/36‑1 (MQ=255) tGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCAc > 1:233963/1‑150 (MQ=255) tGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGa > 2:127323/1‑150 (MQ=255) aCTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATc < 2:17778/113‑1 (MQ=255) aCTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATc > 1:17778/1‑113 (MQ=255) cTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAggg < 1:238544/150‑1 (MQ=255) ttCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAgggg < 2:233963/150‑1 (MQ=255) tATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGgctg < 2:273342/150‑1 (MQ=255) gccAACCTGCTGGCCGGCTACCACTCTCGCTCCCGCAAAATGGGAGCCGTGGCCTATCGGCACCTGGCCAAGAACTACATCGCCGTGTTCCCGCACTTCATCCCGCCAGGCATCTGGGACGCGACCTACGTGATCCAGGGGCCGCTCAAg > 2:47599/3‑150 (MQ=255) CGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGt < 1:263009‑M1/150‑1 (MQ=255) | CGTCACCTCTCGCTGGAAAAACTGGACAAGGCTAACCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGT > NC_002947/3368688‑3368986 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |