| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3368837 = | 15 (0.650) | 5 (0.230) | 5/240 | NT | 24.8% | coding (2100/3015 nt) | PP_2964 | transposase |
| ? | NC_002947 | 3368872 = | 16 (0.720) | coding (2135/3015 nt) | PP_2964 | transposase | |||||
CCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGACACGGTGTACTCCGATACCCAAGGG > NC_002947/3368723‑3369020 | ccGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt < 1:235923/150‑1 (MQ=255) ctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTgg > 2:90455‑M1/113‑150 (MQ=255) gcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTg < 1:187827‑M1/37‑1 (MQ=255) gcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTg > 2:187827‑M1/97‑133 (MQ=255) ctACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGc > 1:273342/1‑150 (MQ=255) cTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTAc > 2:238544/1‑150 (MQ=255) cAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGtt > 1:549118/1‑150 (MQ=255) cAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGAATACTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGtt > 2:69663/1‑150 (MQ=255) cctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt < 2:410879‑M1/36‑1 (MQ=255) cctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt > 1:410879‑M1/73‑108 (MQ=255) tGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCAc > 1:233963/1‑150 (MQ=255) tGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGa > 2:127323/1‑150 (MQ=255) aCTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATc < 2:17778/113‑1 (MQ=255) aCTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATc > 1:17778/1‑113 (MQ=255) cTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAggg < 1:238544/150‑1 (MQ=255) ttCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAgggg < 2:233963/150‑1 (MQ=255) tATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGgctg < 2:273342/150‑1 (MQ=255) gccAACCTGCTGGCCGGCTACCACTCTCGCTCCCGCAAAATGGGAGCCGTGGCCTATCGGCACCTGGCCAAGAACTACATCGCCGTGTTCCCGCACTTCATCCCGCCAGGCATCTGGGACGCGACCTACGTGATCCAGGGGCCGCTCAAg > 2:47599/3‑150 (MQ=255) ccacggctcccattttgcggtagcgaaagtggtagccgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAg > 2:90455‑M2/39‑150 (MQ=255) cacggctcccattttgcggtagcgaaagtggtagccgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGgctgc > 2:187827‑M2/38‑133 (MQ=255) cacggctcccattttgcggtagcgaaagtggtagccgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGgctgc < 1:187827‑M2/96‑1 (MQ=255) acggctcccattttgcggtagcgaaagtggtagccgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAgg < 2:410879‑M2/72‑1 (MQ=255) acggctcccattttgcggtagcgaaagtggtagccgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAgg > 1:410879‑M2/37‑108 (MQ=255) CGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGt < 1:263009‑M1/150‑1 (MQ=255) aCCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAgg < 2:549118/150‑1 (MQ=255) ccACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGc < 1:69663/150‑1 (MQ=255) cGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAgg < 2:179812/118‑1 (MQ=255) cGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAgg > 1:179812/1‑118 (MQ=255) aTGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCaa < 1:14658/110‑1 (MQ=255) aTGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCaa > 2:14658/1‑110 (MQ=255) tggtagccgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGACACGGTGTACTCCGATa < 1:90455‑M2/141‑1 (MQ=255) gccgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGACACGGTGTACTCCGATACCCaa < 1:591755‑M2/146‑1 (MQ=255) ccgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGACACGGTGTACTCCGATACCCAAg > 2:277123‑M2/4‑150 (MQ=255) cgTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGACACGGTGTACTCCGATACCCAAgg < 1:127323‑M2/148‑1 (MQ=255) gTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCTCTTCATCCCGCCGGGCATCTGGTATGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGACACGGTGTACTCCGATACCCAAggg > 1:600910‑M2/2‑150 (MQ=255) gTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGa > 2:271330‑M2/2‑125 (MQ=255) gTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGa < 1:271330‑M2/124‑1 (MQ=255) | CCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGTCGAGGCTGACACGGTGTACTCCGATACCCAAGGG > NC_002947/3368723‑3369020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |