New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3393681 =	30 (1.300)	5 (0.230)	7/232	NT	16.7%	coding (769/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3393710 =	22 (1.030)					coding (740/900 nt)	PP_2997	protein CnmA

TCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCA  >  NC_002947/3393535‑3393827                                                                                                                                                   |                                                                                                                                                   tCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCat                                                                                                                                                 >  2:465621/1‑150 (MQ=255)  cATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCata                                                                                                                                                <  1:259743/150‑1 (MQ=255)   gatcagtttcggcaccgggcagaagctgctggaagcgggattggcgcgggccgggatcgaacggcggatcatgctcgagctgccagcgtttctcgggctggggaagataatcgggactaccgacctactgggcaccttgccgcgGCatat                                                                                                                                               >  1:413549‑M1/145‑150 (MQ=255)    atcagtttcggcaccgggcagaagctgctggaagcgggattggcgcgggccgggatcgaacggcggatcatgctcgagctgccagcgtttctcgggctggggaagataatcgggactaccgacctactgggcaccttgccgcgGCATATc                                                                                                                                              <  2:570595‑M1/7‑1 (MQ=255)           ctggctCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAgt                                                                                                                                       <  1:443522/150‑1 (MQ=255)                tCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTg                                                                                                                                  >  2:542378/1‑150 (MQ=255)                tCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTg                                                                                                                                  >  1:412242/1‑150 (MQ=255)                   cTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGccc                                                                                                                               <  2:430831/150‑1 (MQ=255)                    tGGAACAATCCGCGAACGAACTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCACg                                                                                                                              >  1:117070/1‑150 (MQ=255)                      cagaagctgctggaagggggattggcgcgggccgggatcgaacggcggatcatgctcgagctcacagtggttcgcgggctggggaagataatcgggactaccgacctactgggcaccttgccgcgGCATATCGGCCAGTGTCTGCCCGat                                                                                                                            >  1:168156‑M1/126‑150 (MQ=255)                              cgcgAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCcgcg                                                                                                                    >  1:177848/1‑150 (MQ=255)                               gcgAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAgt                                                                                                                                       >  2:395786/1‑130 (MQ=255)                               gcgAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAgt                                                                                                                                       <  1:395786/130‑1 (MQ=255)                                     gACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGGCAGACACTGGCCGATATGcatg                                                                                                                     >  1:150661/1‑139 (MQ=255)                                     gACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGGCAGACACTGGCCGATATGcatg                                                                                                                     <  2:150661/142‑4 (MQ=255)                                                 ccATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCata                                                                                                                                                >  1:267533/1‑103 (MQ=255)                                                 ccATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCata                                                                                                                                                <  2:267533/103‑1 (MQ=255)                                                                 tCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCTGATTATc                                                                                 <  1:465621/150‑1 (MQ=255)                                                                        ggtatcGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCa                                                                          >  2:332230/6‑150 (MQ=255)                                                                                     ccAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGGGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGc                                                             <  1:417396/150‑1 (MQ=255)                                                                                      cAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGCCCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCt                                                            <  2:412242/150‑1 (MQ=255)                                                                                      cAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCt                                                            <  1:542378/150‑1 (MQ=255)                                                                                        gcgtttctcgggctggggaagataatcgggactaccgacctactgggcaccttgccgcgGCATATCGGCCAGTGTCTGCCCGata                                                                                                                           <  2:86090‑M1/26‑1 (MQ=255)                                                                                        gcgtttctcgggctggggaagataatcgggactaccgacctactgggcaccttgccgcgGCATATCGGCCAGTGTCTGCCCGata                                                                                                                           >  1:86090‑M1/60‑85 (MQ=255)                                                                                        aTGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTgg                                                          <  2:177848/150‑1 (MQ=255)                                                                                                             cTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATccgccg                                     >  2:489370/1‑150 (MQ=255)                                                                                                             cTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATccgccg                                     >  2:424474/1‑150 (MQ=255)                                                                                                              tCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGt                                    >  1:240891/1‑150 (MQ=255)                                                                                                                   ttCGAACGGGCAGTCATGGACCTGTAGCCTATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCACGGCGGCCAGTAGGTCGGGAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGGTCCGCCGTTCGAt                               >  1:439172/1‑150 (MQ=255)                                                                                                                   ttCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTcc                                                                             >  1:457072/1‑104 (MQ=255)                                                                                                                   ttCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTcc                                                                             <  2:457072/104‑1 (MQ=255)                                                                                                                         cGGGCAGTCATGGACCTGTAGTCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCTCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGc                         <  1:338774/150‑1 (MQ=255)                                                                                                                             acctactgggcaccttgccgcgGCATATCGGCCAGTGTCTGCCCGatat                                                                                                                          <  1:545731‑M1/27‑1 (MQ=255)                                                                                                                             acctactgggcaccttgccgcgGCATATCGGCCAGTGTCTGCCCGatat                                                                                                                          >  2:545731‑M1/23‑49 (MQ=255)                                                                                                                                tCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGtt                                   <  2:30017/133‑1 (MQ=255)                                                                                                                                tCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGtt                                   >  1:30017/1‑133 (MQ=255)                                                                                                                                   tGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAg                                                                                            <  2:7989/73‑1 (MQ=255)                                                                                                                                   tGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAg                                                                                            >  1:7989/1‑73 (MQ=255)                                                                                                                                   gggACCTGTAGCGCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAAt               <  2:601527/149‑1 (MQ=255)                                                                                                                                    ggACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATc              <  2:369353/150‑1 (MQ=255)                                                                                                                                           tAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTc       <  1:174505/150‑1 (MQ=255)                                                                                                                                           ccccccATACATCTCGGACAGGGCTCGACCGATATTCTGTGTCAAGGATCCCAGTACGTCTGTCATCCCGATTATCTTCCCCAGCCCGAGATACGCTGGCACCTCGAGCATCATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTc       <  2:117070/147‑1 (MQ=255)                                                                                                                                                cATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCcagca  >  1:1810/1‑150 (MQ=255)                                                                                                                                                   GCATATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCgag                                                                   <  1:395565‑M1/82‑1 (MQ=255)                                                                                                                                                   GCATATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCgag                                                                   >  2:395565‑M1/1‑82 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCA  >  NC_002947/3393535‑3393827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.