New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3393681 =	30 (1.300)	5 (0.230)	7/232	NT	16.7%	coding (769/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3393710 =	22 (1.030)					coding (740/900 nt)	PP_2997	protein CnmA

CGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATC  >  NC_002947/3393564‑3393853                                                                                                                                                   |                                                                                                                                                cgcgAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCcgcg                                                                                                                                              >  1:177848/1‑150 (MQ=255)                                    tCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCTGATTATc                                                                                                           <  1:465621/150‑1 (MQ=255)                                           ggtatcGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCa                                                                                                    >  2:332230/6‑150 (MQ=255)                                                        ccAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGGGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGc                                                                                       <  1:417396/150‑1 (MQ=255)                                                         cAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGCCCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCt                                                                                      <  2:412242/150‑1 (MQ=255)                                                         cAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCt                                                                                      <  1:542378/150‑1 (MQ=255)                                                           aTGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTgg                                                                                    <  2:177848/150‑1 (MQ=255)                                                                                cTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATccgccg                                                               >  2:424474/1‑150 (MQ=255)                                                                                cTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATccgccg                                                               >  2:489370/1‑150 (MQ=255)                                                                                 tCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGt                                                              >  1:240891/1‑150 (MQ=255)                                                                                      ttCGAACGGGCAGTCATGGACCTGTAGCCTATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCACGGCGGCCAGTAGGTCGGGAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGGTCCGCCGTTCGAt                                                         >  1:439172/1‑150 (MQ=255)                                                                                      ttCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTcc                                                                                                       <  2:457072/104‑1 (MQ=255)                                                                                      ttCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTcc                                                                                                       >  1:457072/1‑104 (MQ=255)                                                                                            cGGGCAGTCATGGACCTGTAGTCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCTCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGc                                                   <  1:338774/150‑1 (MQ=255)                                                                                                   tCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGtt                                                             >  1:30017/1‑133 (MQ=255)                                                                                                   tCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGtt                                                             <  2:30017/133‑1 (MQ=255)                                                                                                      tGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAg                                                                                                                      >  1:7989/1‑73 (MQ=255)                                                                                                      tGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAg                                                                                                                      <  2:7989/73‑1 (MQ=255)                                                                                                      gggACCTGTAGCGCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAAt                                         <  2:601527/149‑1 (MQ=255)                                                                                                       ggACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATc                                        <  2:369353/150‑1 (MQ=255)                                                                                                              tAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTc                                 <  1:174505/150‑1 (MQ=255)                                                                                                              ccccccATACATCTCGGACAGGGCTCGACCGATATTCTGTGTCAAGGATCCCAGTACGTCTGTCATCCCGATTATCTTCCCCAGCCCGAGATACGCTGGCACCTCGAGCATCATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTc                                 <  2:117070/147‑1 (MQ=255)                                                                                                                   cATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCcagca                            >  1:1810/1‑150 (MQ=255)                                                                                                                      GCATATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCgag                                                                                             <  1:395565‑M1/82‑1 (MQ=255)                                                                                                                      GCATATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCgag                                                                                             >  2:395565‑M1/1‑82 (MQ=255)                                                                                                                        atatcgggcagacactggccgatatgcCGCGGCAAGGTGCCCAGTAGGt                                                                                                                            >  2:545731‑M2/28‑49 (MQ=255)                                                                                                                        atatcgggcagacactggccgatatgcCGCGGCAAGGTGCCCAGTAGGt                                                                                                                            <  1:545731‑M2/22‑1 (MQ=255)                                                                                                                         tatcgggcagacactggccgatatgcCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGc                                                                                       <  2:86090‑M2/59‑1 (MQ=255)                                                                                                                         tatcgggcagacactggccgatatgcCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGc                                                                                       >  1:86090‑M2/27‑85 (MQ=255)                                                                                                                          atcgggcagacactggccgatatgcCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGCGAACCACTGTGAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCCCTTCCAGCAGCTTCTg                     >  1:168156‑M2/26‑150 (MQ=255)                                                                                                                             GGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGccc                  >  1:424474‑M1/1‑150 (MQ=255)                                                                                                                                       tGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGaaa        <  1:466885/150‑1 (MQ=255)                                                                                                                                         cccGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACt      >  1:342183/1‑150 (MQ=255)                                                                                                                                         cccGATATGCCGCGGCAAGGTGCCCAGNAGGTCGGTAGTCNCGATTANCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACt      >  1:570595/1‑150 (MQ=255)                                                                                                                                            gatatgcCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGAt   <  2:570595‑M2/143‑1 (MQ=255)                                                                                                                                             atatgcCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATc  >  1:413549‑M2/7‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                CGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATC  >  NC_002947/3393564‑3393853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.