New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3460753	27 (1.170)	3 (0.140)	3/240	NT	10.2%	coding (665/1017 nt)	PP_3076	ABC transporter permease
	?	NC_002947	= 3460786	27 (1.220)					coding (632/1017 nt)	PP_3076	ABC transporter permease

CCCCGGTCAGCATGAACGGCACATAGGTCAGCGTGGCATTCATGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTG  >  NC_002947/3460607‑3460892                                                                                                                                                   |                                                                                                                                            ccccGGTCAGCATGAACGGCACATAGGTCAGCGTGGCATTCATGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCa                                                                                                                                          >  1:217911/1‑150 (MQ=255)                   gCACATAGGTCAGCGTGGCATTCATGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTcg                                                                                                                        <  2:518300/150‑2 (MQ=255)                                          aTGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGa                                                                                                   <  1:163827/148‑1 (MQ=255)                                          aTGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGa                                                                                                   >  2:163827/1‑148 (MQ=255)                                            ggCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCtgttctcctggctgaccctggtcgacgtcgtgcgcgccgagttcct                                                                                               <  1:74380‑M1/150‑47 (MQ=255)                                                 tGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCcagca                                                                                          <  2:430125/150‑1 (MQ=255)                                                              ccGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCtgttctcctggctgaccctggtcgacgtcgtgcgcgccga                                                                                                     <  1:231324‑M1/126‑41 (MQ=255)                                                              ccGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCtgttctcctggctgaccctggtcgacgtcgtgcgcgccga                                                                                                     >  2:231324‑M1/1‑86 (MQ=255)                                                              ccGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATc                                                                             >  2:238316/1‑150 (MQ=255)                                                               cGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc                                                                            >  1:70380/1‑150 (MQ=255)                                                                  aaCATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTc                                                                                                                         <  2:31398/102‑1 (MQ=255)                                                                  aaCATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTc                                                                                                                         >  1:31398/1‑102 (MQ=255)                                                                            gACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAAc                                                               >  2:125218/1‑150 (MQ=255)                                                                                        aCCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGgatga                                                   <  2:70380/150‑1 (MQ=255)                                                                                          cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc                                                 >  1:562054/1‑150 (MQ=255)                                                                                          cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc                                                 <  2:217911/150‑1 (MQ=255)                                                                                          cccAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATc                                                 >  1:279846/1‑150 (MQ=255)                                                                                            cAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCaa                                               <  1:465867/150‑1 (MQ=255)                                                                                                          ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg                                 <  1:125218/150‑1 (MQ=255)                                                                                                          ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg                                 <  2:554146/150‑1 (MQ=255)                                                                                                          ccTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTg                                 >  2:449036/1‑150 (MQ=255)                                                                                                            tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATacaa                                      >  2:89442/1‑143 (MQ=255)                                                                                                            tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATacaa                                      <  1:89442/143‑1 (MQ=255)                                                                                                            tttACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGc                               >  2:140320/1‑150 (MQ=255)                                                                                                                  tACTCCAGGTTGCG‑CCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGaa                                                                                                              >  1:354549/1‑64 (MQ=255)                                                                                                                  tACTCCAGGTTGCG‑CCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGaa                                                                                                              <  2:354549/64‑1 (MQ=255)                                                                                                                                 ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc                                                                            <  2:400503/84‑1 (MQ=255)                                                                                                                                 ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATcc                                                                            >  1:400503/1‑84 (MQ=255)                                                                                                                                 ccACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGc          >  2:544112/1‑150 (MQ=255)                                                                                                                                     gCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAgc      >  1:376770/1‑150 (MQ=255)                                                                                                                                       aGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcggcatatcttgcccaatgcc    <  1:74380‑M2/150‑105 (MQ=255)                                                                                                                                         gAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTg  <  1:238316/150‑1 (MQ=255)                                                                                                                                             tCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcgg                      >  2:231324‑M2/1‑40 (MQ=255)                                                                                                                                             tCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAgcgccgagttcctgcgtgggcgcaacctggagtatgtaaaggcagcgcgggcgttggggttaccggacagtcaggtgatgttgcgg                      <  1:231324‑M2/126‑87 (MQ=255)                                                                                                                                                   |                                                                                                                                            CCCCGGTCAGCATGAACGGCACATAGGTCAGCGTGGCATTCATGGCATTGGGCAAGATATGCCGCAACATCACCTGACTGTCCGGTAACCCCAACGCCCGCGCTGCCTTTACATACTCCAGGTTGCGCCCACGCAGGAACTCGGCGCGCACGACGTCGACCAGGGTCAGCCAGGAGAACAGCGCCATGATCCCCAGCAGCCACCAGAAATCCGGCTCGACGAAACCGCTGAGGATGATCAACAGATACAACACTGGCAACCCCGACCATACTTCCAGCAAGCGCTG  >  NC_002947/3460607‑3460892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.